MLOC_11097 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.422130.3339050.3610350.427129
LEAShoots from the seedlings (10 cm shoot stage)0.0704580.075522700.0689089
INF1Young developing inflorescences (5mm)000.09569090.169336
INF2Developing inflorescences (1-1.5 cm)0.07576180.07023480.04971310.0864493
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.3363510.4941070.7663212.05303
CAR5Developing grain, bracts removed (5 DPA)1.509090.7835570.7431821.07735
CAR15Developing grain, bracts removed (15 DPA)17.744117.015216.738144.8259



CDS Structure of MLOC_11097






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11097.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11097.2CUST_1720_PI427708083AvailableAvailablecontig_1560377 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17780.1 -2 3e-163 482 228/289 (79%) 13102.m01986 protein ent-kaurene synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT4G02780.1 -2 1e-132 400 186/288 (65%) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802