MLOC_11060 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.24654.25393.919124.77773
LEAShoots from the seedlings (10 cm shoot stage)6.8449.3257917.058110.3931
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.02250170.06392190.02735570.0592861
ROORoots from the seedlings (10 cm shoot stage)25.486226.437231.335936.7628
NODDeveloping tillers at six leaf stage, 3rd internode4.909247.454732.9499519.9782
CAR5Developing grain, bracts removed (5 DPA)18.968520.567717.638622.9097
CAR15Developing grain, bracts removed (15 DPA)6.18715.425018.0800417.7025



CDS Structure of MLOC_11060






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11060.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375446NoneNoneNoneNone
MLOC_11060.1CUST_17894_PI427708080AvailableAvailablecontig_1560268 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07200.2 -1 2e-125 371 203/290 (70%) 13103.m00802 protein expressed protein
TAIR PP10 AT5G39530.1 -1 2e-50 174 83/190 (44%) Protein of unknown function (DUF1997) | chr5:15826285-15827517 REVERSE LENGTH=239