MLOC_11059 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.404371.517611.151121.67618
LEAShoots from the seedlings (10 cm shoot stage)4.460568.0029419.446410.6602
INF1Young developing inflorescences (5mm)0.907230.7947071.027330.889473
INF2Developing inflorescences (1-1.5 cm)0.7023131.200431.191761.37574
ROORoots from the seedlings (10 cm shoot stage)7.118735.129223.28137.48736
NODDeveloping tillers at six leaf stage, 3rd internode1.759973.989173.8781913.8603
CAR5Developing grain, bracts removed (5 DPA)1.470561.442921.645251.8322
CAR15Developing grain, bracts removed (15 DPA)1.142571.223490.589332.9222



CDS Structure of MLOC_11059






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11059.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363907NoneNoneNoneNone
MLOC_11059.2CUST_974_PI427708080AvailableAvailablecontig_1560268 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07190.1 +1 7e-102 306 161/203 (79%) 13103.m00801 protein expressed protein
TAIR PP10 AT1G13990.1 +1 2e-76 240 123/200 (62%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4794810-4796476 FORWARD LENGTH=277