MLOC_11049 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.468064.03913.053472.97666
LEAShoots from the seedlings (10 cm shoot stage)5.974788.433795.725164.85106
INF1Young developing inflorescences (5mm)2.708773.69323.881143.02073
INF2Developing inflorescences (1-1.5 cm)3.654973.750083.433494.0278
ROORoots from the seedlings (10 cm shoot stage)1.776870.5427830.5623580.689538
NODDeveloping tillers at six leaf stage, 3rd internode2.536961.578924.006054.29344
CAR5Developing grain, bracts removed (5 DPA)3.097262.999393.48113.13669
CAR15Developing grain, bracts removed (15 DPA)1.433241.421631.526113.65607



CDS Structure of MLOC_11049






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11049.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_11049.1CUST_1713_PI427708083AvailableAvailablecontig_1560255 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07020.1 -2 6e-22 94 41/46 (89%) 13112.m00727 protein 5-formyltetrahydrofolate cyclo-ligase, putative, expressed
TAIR PP10 AT1G76730.1 -2 5e-15 74 30/43 (70%) NagB/RpiA/CoA transferase-like superfamily protein | chr1:28803033-28804703 REVERSE LENGTH=354