MLOC_11045 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.8369812.843510.67410.9262
LEAShoots from the seedlings (10 cm shoot stage)12.445710.599810.8649.99753
INF1Young developing inflorescences (5mm)27.869426.963224.906821.7759
INF2Developing inflorescences (1-1.5 cm)24.282528.329323.866627.8061
ROORoots from the seedlings (10 cm shoot stage)5.3358212.11129.3178213.3081
NODDeveloping tillers at six leaf stage, 3rd internode4.755334.691625.422316.6792
CAR5Developing grain, bracts removed (5 DPA)18.031817.228817.721816.8492
CAR15Developing grain, bracts removed (15 DPA)10.04178.791279.0874121.0314



CDS Structure of MLOC_11045






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_11045.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364075NoneNoneNoneNone
MLOC_11045.3CUST_973_PI427708080AvailableAvailablecontig_1560248 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g07500.1 +3 0.0 1723 909/1008 (90%) 13111.m00784 protein DSHCT domain containing protein, expressed
TAIR PP10 AT2G06990.1 +3 0.0 1477 748/1007 (74%) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995