MLOC_10934 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.630158.854357.23152.4694
LEAShoots from the seedlings (10 cm shoot stage)54.733149.754147.492341.303
INF1Young developing inflorescences (5mm)43.501443.914239.179235.6114
INF2Developing inflorescences (1-1.5 cm)54.363159.317454.215860.5062
ROORoots from the seedlings (10 cm shoot stage)61.288367.765647.345571.0436
NODDeveloping tillers at six leaf stage, 3rd internode127.259150.94136.89464.446
CAR5Developing grain, bracts removed (5 DPA)78.908274.304974.894271.2501
CAR15Developing grain, bracts removed (15 DPA)8.834428.57339.5898520.4613



CDS Structure of MLOC_10934






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10934.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248499.1NoneNoneNoneNone
MLOC_10934.1CUST_17890_PI427708080AvailableAvailablecontig_1560060 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55590.1 -1 0.0 688 408/533 (77%) 13102.m06377 protein expressed protein
TAIR PP10 AT2G12400.1 -1 1e-171 509 304/485 (63%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541