MLOC_10909 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8408271.416530.8436531.02744
LEAShoots from the seedlings (10 cm shoot stage)1.38371.246891.244371.06269
INF1Young developing inflorescences (5mm)1.923761.93512.325011.51795
INF2Developing inflorescences (1-1.5 cm)2.184182.036232.167362.04933
ROORoots from the seedlings (10 cm shoot stage)0.5806961.307051.404711.3145
NODDeveloping tillers at six leaf stage, 3rd internode0.8759410.7881581.490722.99123
CAR5Developing grain, bracts removed (5 DPA)1.189471.110281.233530.98455
CAR15Developing grain, bracts removed (15 DPA)0.8747161.255470.8844651.99527



CDS Structure of MLOC_10909






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10909.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10909.2CUST_1697_PI427708083AvailableAvailablecontig_1560021 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52594.5 +3 1e-73 198 134/178 (75%) 13103.m05729 protein CCR4-NOT transcription factor, putative, expressed
TAIR PP10 AT5G59710.1 +3 6e-40 107 99/178 (56%) | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein 2 | chr5:24058157-24061736 FORWARD LENGTH=614