MLOC_10876 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.158380.9753311.396711.11378
LEAShoots from the seedlings (10 cm shoot stage)15.58453.826696.558187.83988
INF1Young developing inflorescences (5mm)0.5316220.7963830.7241750.55333
INF2Developing inflorescences (1-1.5 cm)1.051720.5031140.3089150.695222
ROORoots from the seedlings (10 cm shoot stage)6.478994.449318.78277.37909
NODDeveloping tillers at six leaf stage, 3rd internode383.544355.12535.71271042.05
CAR5Developing grain, bracts removed (5 DPA)1299.731134.41209.041137.7
CAR15Developing grain, bracts removed (15 DPA)2.677662.827623.877036.42436



CDS Structure of MLOC_10876






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10876.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376565NoneNoneNoneNone
MLOC_10876.2CUST_947_PI427708080AvailableAvailablecontig_1559969 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g03780.2 -1 0.0 1014 491/622 (79%) 13111.m00322 protein alpha-N-arabinofuranosidase, putative, expressed
TAIR PP10 AT3G10740.1 -1 0.0 772 387/615 (63%) | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678