MLOC_10860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4737430.3238180.536440.451107
LEAShoots from the seedlings (10 cm shoot stage)0.1726120.66940300.377565
INF1Young developing inflorescences (5mm)2.610662.844824.076373.01524
INF2Developing inflorescences (1-1.5 cm)7.886995.840326.574928.09049
ROORoots from the seedlings (10 cm shoot stage)1.451561.068991.989291.51549
NODDeveloping tillers at six leaf stage, 3rd internode1.473752.101360.5480495.11722
CAR5Developing grain, bracts removed (5 DPA)0.07250520.03390780.03544250.049709
CAR15Developing grain, bracts removed (15 DPA)0.053222600.03857980.120051



CDS Structure of MLOC_10860






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10860.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10860.3CUST_8706_PI427708080AvailableAvailablecontig_1559944 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g39100.1 -3 2e-24 101 91/205 (44%) 13112.m04043 protein expressed protein
TAIR PP10 AT5G67390.2 -3 7e-11 61 28/42 (67%) unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:26887883-26888512 REVERSE LENGTH=176