MLOC_10777 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.059623.706424.127924.3769
LEAShoots from the seedlings (10 cm shoot stage)12.27515.262613.943611.7831
INF1Young developing inflorescences (5mm)9.481558.7767310.79128.20616
INF2Developing inflorescences (1-1.5 cm)13.804313.257614.006315.086
ROORoots from the seedlings (10 cm shoot stage)25.247619.688121.499925.7567
NODDeveloping tillers at six leaf stage, 3rd internode16.617413.679513.154443.9624
CAR5Developing grain, bracts removed (5 DPA)17.46616.953615.646616.8307
CAR15Developing grain, bracts removed (15 DPA)6.183216.341197.4547315.3521



CDS Structure of MLOC_10777






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10777.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369238NoneNoneNoneNone
MLOC_10777.4CUST_933_PI427708080AvailableAvailablecontig_1559757 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g28840.1 +2 6e-114 338 187/239 (78%) 13108.m02979 protein hydrolase, NUDIX family, domain containing protein, expressed
TAIR PP10 AT1G28960.5 +2 5e-78 246 140/251 (56%) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110135-10111607 REVERSE LENGTH=293