MLOC_10712 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.793684.045713.615472.83789
LEAShoots from the seedlings (10 cm shoot stage)7.690766.169874.820714.47564
INF1Young developing inflorescences (5mm)6.405475.652954.927773.85339
INF2Developing inflorescences (1-1.5 cm)7.768936.021347.257746.07206
ROORoots from the seedlings (10 cm shoot stage)4.344493.865954.863213.79748
NODDeveloping tillers at six leaf stage, 3rd internode0.8234811.162491.676913.49165
CAR5Developing grain, bracts removed (5 DPA)10.2059.503029.8077.24617
CAR15Developing grain, bracts removed (15 DPA)5.982796.282486.3705810.6154



CDS Structure of MLOC_10712






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10712.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357757NoneNoneNoneNone
MLOC_10712.1CUST_87_PI427708083AvailableAvailablecontig_1559651 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g01040.1 +2 2e-99 328 235/513 (46%) 13108.m00004 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT4G34100.1 +2 3e-50 192 189/616 (31%) RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1108