MLOC_1071 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.342042.503461.471712.82559
LEAShoots from the seedlings (10 cm shoot stage)01.904561.803312.71794
INF1Young developing inflorescences (5mm)1.465611.594281.0861.68968
INF2Developing inflorescences (1-1.5 cm)3.838863.164371.795264.70698
ROORoots from the seedlings (10 cm shoot stage)4.320781.587762.023813.01411
NODDeveloping tillers at six leaf stage, 3rd internode1.693345.728246.3584728.1517
CAR5Developing grain, bracts removed (5 DPA)3.474182.583062.368843.62667
CAR15Developing grain, bracts removed (15 DPA)1.790180.8598421.156214.03796



CDS Structure of MLOC_1071






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1071.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1071.1CUST_1668_PI427708083AvailableAvailablecontig_1089743 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 +1 2e-39 136 59/60 (98%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 +1 2e-35 124 53/60 (88%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358