MLOC_10702 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.900115.777118.63613.8103
LEAShoots from the seedlings (10 cm shoot stage)102.198131.368121.51393.3603
INF1Young developing inflorescences (5mm)15.372114.523913.382810.8476
INF2Developing inflorescences (1-1.5 cm)12.151112.773812.220112.2577
ROORoots from the seedlings (10 cm shoot stage)17.279120.073619.410321.2154
NODDeveloping tillers at six leaf stage, 3rd internode23.111817.529222.156760.2641
CAR5Developing grain, bracts removed (5 DPA)20.265920.956420.89717.8058
CAR15Developing grain, bracts removed (15 DPA)14.788514.909414.465929.4802



CDS Structure of MLOC_10702






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10702.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371906NoneNoneNoneNone
MLOC_10702.4CUST_17884_PI427708080AvailableAvailablecontig_1559537 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08570.1 +2 0.0 1051 515/578 (89%) 13103.m00988 protein amine oxidase, flavin-containing, domain containing protein, expressed
TAIR PP10 AT4G14210.1 +2 0.0 899 448/571 (78%) | Symbols: PDS3, PDS, PDE226 | phytoene desaturase 3 | chr4:8190426-8194769 REVERSE LENGTH=566