MLOC_10587 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.811618.5027510.08799.92725
LEAShoots from the seedlings (10 cm shoot stage)12.306811.493810.79810.9239
INF1Young developing inflorescences (5mm)16.741815.532716.366414.0813
INF2Developing inflorescences (1-1.5 cm)20.38326.683622.712726.5444
ROORoots from the seedlings (10 cm shoot stage)5.3612310.02666.2336312.2961
NODDeveloping tillers at six leaf stage, 3rd internode10.491913.214916.159652.3102
CAR5Developing grain, bracts removed (5 DPA)15.16812.819114.951814.0852
CAR15Developing grain, bracts removed (15 DPA)11.098410.870812.639826.4758



CDS Structure of MLOC_10587






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10587.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10587.2CUST_8654_PI427708080AvailableAvailablecontig_1559410 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g31970.1 -1 1e-122 390 231/308 (75%) 13110.m02793 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT1G08600.1 -1 6e-80 269 161/299 (54%) | Symbols: ATRX, CHR20 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2724562-2733431 FORWARD LENGTH=1458