MLOC_10579 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains59.606161.557262.230867.7164
LEAShoots from the seedlings (10 cm shoot stage)77.158779.466649.383261.8556
INF1Young developing inflorescences (5mm)99.8128116.032118.75599.1863
INF2Developing inflorescences (1-1.5 cm)106.332109.401108.061125.801
ROORoots from the seedlings (10 cm shoot stage)50.834251.692957.293869.858
NODDeveloping tillers at six leaf stage, 3rd internode30.219323.26518.318377.0561
CAR5Developing grain, bracts removed (5 DPA)51.207147.684739.967148.9016
CAR15Developing grain, bracts removed (15 DPA)10.477810.53419.9887126.0361



CDS Structure of MLOC_10579






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10579.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364070NoneNoneNoneNone
MLOC_10579.1CUST_901_PI427708080AvailableAvailablecontig_1559392 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12220.1 -2 1e-116 343 162/193 (84%) 13106.m01334 protein HVA22, putative, expressed
TAIR PP10 AT1G74520.1 -2 2e-73 231 106/154 (69%) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177