MLOC_10557 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains43.727424.152731.281723.409
LEAShoots from the seedlings (10 cm shoot stage)18.08273.536094.581016.73589
INF1Young developing inflorescences (5mm)70.852583.561491.076349.2443
INF2Developing inflorescences (1-1.5 cm)58.097772.244661.681452.7871
ROORoots from the seedlings (10 cm shoot stage)27.036517.056923.267815.9634
NODDeveloping tillers at six leaf stage, 3rd internode1.997912.976183.185487.207
CAR5Developing grain, bracts removed (5 DPA)14.967415.051513.09610.0586
CAR15Developing grain, bracts removed (15 DPA)1.376290.7211281.500392.05911



CDS Structure of MLOC_10557






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10557.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10557.1CUST_11315_PI427708083AvailableAvailablecontig_1559354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38560.1 -2 2e-17 81 41/41 (100%) 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT3G09480.1 -2 3e-17 80 40/41 (98%) Histone superfamily protein | chr3:2914890-2915270 REVERSE LENGTH=126