MLOC_10539 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.077732.554172.228142.0822
LEAShoots from the seedlings (10 cm shoot stage)0.1054610.03721360.03048030.0497639
INF1Young developing inflorescences (5mm)0.2043880.352560.207690.191772
INF2Developing inflorescences (1-1.5 cm)0.1600280.2261680.1905090.187797
ROORoots from the seedlings (10 cm shoot stage)0.8389922.414890.8299882.05629
NODDeveloping tillers at six leaf stage, 3rd internode00.006985650.01082510.0354597
CAR5Developing grain, bracts removed (5 DPA)0.05948830.3442110.1709910.165937
CAR15Developing grain, bracts removed (15 DPA)00.020516500.0444322



CDS Structure of MLOC_10539






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10539.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10539.3CUST_8644_PI427708080AvailableAvailablecontig_1559316 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30770.1 -1 0.0 1040 557/680 (82%) 13108.m03185 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT3G47780.1 -1 0.0 850 444/677 (66%) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935