MLOC_10538 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.036208000.0219473
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.3345150.6738140.4346790.366216
CAR15Developing grain, bracts removed (15 DPA)2.982432.242832.695334.6572



CDS Structure of MLOC_10538






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10538.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10538.2CUST_8643_PI427708080AvailableAvailablecontig_1559312 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07650.1 -1 6e-34 137 108/361 (30%) 13106.m00797 protein myb-like DNA-binding domain, SHAQKYF class family protein
TAIR PP10 AT5G08520.1 -1 3e-15 78 42/104 (40%) Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298