MLOC_10508 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.7228.9436710.62499.96257
LEAShoots from the seedlings (10 cm shoot stage)14.310214.809213.534810.7149
INF1Young developing inflorescences (5mm)6.620015.126625.505864.00152
INF2Developing inflorescences (1-1.5 cm)4.681235.847084.986384.76973
ROORoots from the seedlings (10 cm shoot stage)17.137419.605314.84118.8581
NODDeveloping tillers at six leaf stage, 3rd internode15.410512.521913.415935.2851
CAR5Developing grain, bracts removed (5 DPA)8.162910.85279.721457.2576
CAR15Developing grain, bracts removed (15 DPA)7.462438.208428.918114.6589



CDS Structure of MLOC_10508






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10508.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10508.1NoneAvailableAvailablecontig_1559243 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39220.1 -2 4e-20 89 62/69 (90%) 13110.m03590 protein tobamovirus multiplication protein, putative, expressed
TAIR PP10 AT2G02180.1 -2 6e-20 87 62/66 (94%) | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303