MLOC_10502 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.480425.244576.389456.786
LEAShoots from the seedlings (10 cm shoot stage)10.49317.156877.788897.84768
INF1Young developing inflorescences (5mm)0.1447620.054622400.098222
INF2Developing inflorescences (1-1.5 cm)0.1509030.374240.3085610.396879
ROORoots from the seedlings (10 cm shoot stage)7.338165.013426.371647.4219
NODDeveloping tillers at six leaf stage, 3rd internode29.709240.954117.4551120.807
CAR5Developing grain, bracts removed (5 DPA)20.411316.424320.158221.9685
CAR15Developing grain, bracts removed (15 DPA)2.896473.577873.071719.20929



CDS Structure of MLOC_10502






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10502.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10502.2CUST_1644_PI427708083AvailableAvailablecontig_1559233 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44950.1 -1 5e-74 231 135/203 (67%) 13104.m04498 protein short-chain dehydrogenase/reductase, putative, expressed
TAIR PP10 AT1G01800.1 -1 2e-39 140 92/194 (47%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:293396-294888 FORWARD LENGTH=295