MLOC_10497 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.239639.371839.39528.60031
LEAShoots from the seedlings (10 cm shoot stage)10.45816.055145.018096.543
INF1Young developing inflorescences (5mm)35.86237.928342.157530.9694
INF2Developing inflorescences (1-1.5 cm)35.086738.868634.186439.3821
ROORoots from the seedlings (10 cm shoot stage)2.853114.417615.37345.58585
NODDeveloping tillers at six leaf stage, 3rd internode1.626542.338045.6827310.2629
CAR5Developing grain, bracts removed (5 DPA)11.102911.217513.331211.5513
CAR15Developing grain, bracts removed (15 DPA)3.687262.681062.7656.88105



CDS Structure of MLOC_10497






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10497.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10497.1CUST_8637_PI427708080AvailableAvailablecontig_1559214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g29464.1 +1 0.0 683 349/402 (87%) 13102.m03209 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT2G31970.1 +1 0.0 574 283/397 (71%) | Symbols: RAD50, ATRAD50 | DNA repair-recombination protein (RAD50) | chr2:13600657-13608815 FORWARD LENGTH=1316