- Predicted Gene MLOC_10497
MLOC_10497 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 6.23963 | 9.37183 | 9.3952 | 8.60031 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.4581 | 6.05514 | 5.01809 | 6.543 |
INF1 | Young developing inflorescences (5mm) | 35.862 | 37.9283 | 42.1575 | 30.9694 |
INF2 | Developing inflorescences (1-1.5 cm) | 35.0867 | 38.8686 | 34.1864 | 39.3821 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.85311 | 4.41761 | 5.3734 | 5.58585 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.62654 | 2.33804 | 5.68273 | 10.2629 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.1029 | 11.2175 | 13.3312 | 11.5513 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.68726 | 2.68106 | 2.765 | 6.88105 |
CDS Structure of MLOC_10497
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_10497.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g29464.1 |
+1 |
0.0 |
683 |
349/402 (87%) |
13102.m03209 protein RecF/RecN/SMC N terminal domain containing protein, expressed |
TAIR PP10 |
AT2G31970.1 |
+1 |
0.0 |
574 |
283/397 (71%) |
| Symbols: RAD50, ATRAD50 | DNA repair-recombination protein (RAD50) | chr2:13600657-13608815 FORWARD LENGTH=1316 |