MLOC_10482 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.728819.084515.225413.8929
LEAShoots from the seedlings (10 cm shoot stage)11.02637.565887.50877.48651
INF1Young developing inflorescences (5mm)74.857269.504966.291654.7746
INF2Developing inflorescences (1-1.5 cm)67.326453.909152.223359.6278
ROORoots from the seedlings (10 cm shoot stage)3.4613513.35389.3291213.439
NODDeveloping tillers at six leaf stage, 3rd internode0.1257350.1254280.4332970.603315
CAR5Developing grain, bracts removed (5 DPA)16.30214.597316.145614.0833
CAR15Developing grain, bracts removed (15 DPA)5.683955.56865.3367811.3212



CDS Structure of MLOC_10482






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10482.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373311NoneNoneNoneNone
MLOC_10482.5CUST_892_PI427708080AvailableAvailablecontig_1559182 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g10350.1 -2 0.0 1311 691/884 (78%) 13107.m01051 protein S1 RNA binding domain containing protein, expressed
TAIR PP10 AT3G11964.1 -2 0.0 1749 967/1821 (53%) RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896