MLOC_10478 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains71.887273.304776.022679.7945
LEAShoots from the seedlings (10 cm shoot stage)66.998152.672846.329150.9479
INF1Young developing inflorescences (5mm)136.631147.115156.692127.536
INF2Developing inflorescences (1-1.5 cm)141.908140.415147.459162.447
ROORoots from the seedlings (10 cm shoot stage)55.946779.818477.6234102.055
NODDeveloping tillers at six leaf stage, 3rd internode51.412554.243560.6398205.314
CAR5Developing grain, bracts removed (5 DPA)81.75181.273881.880283.9908
CAR15Developing grain, bracts removed (15 DPA)53.658350.768355.1535122.782



CDS Structure of MLOC_10478






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10478.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252735.1NoneNoneNoneNone
MLOC_10478.2CUST_890_PI427708080AvailableAvailablecontig_1559172 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g36920.1 -2 0.0 784 408/431 (95%) 13101.m03743 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT5G11170.1 -2 0.0 737 381/428 (89%) DEAD/DEAH box RNA helicase family protein | chr5:3553334-3556646 FORWARD LENGTH=427