MLOC_10465 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains123.431110.0893.5897126.482
LEAShoots from the seedlings (10 cm shoot stage)52.052754.207851.608947.9139
INF1Young developing inflorescences (5mm)111.976117.127105.452109.321
INF2Developing inflorescences (1-1.5 cm)90.854110.043118.292136.75
ROORoots from the seedlings (10 cm shoot stage)99.9513105.757103.492147.227
NODDeveloping tillers at six leaf stage, 3rd internode76.767667.352.0211200.955
CAR5Developing grain, bracts removed (5 DPA)114.853124.073115.491140.79
CAR15Developing grain, bracts removed (15 DPA)30.556229.076526.009679.0157



CDS Structure of MLOC_10465






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10465.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248671.1NoneNoneNoneNone
MLOC_10465.1CUST_889_PI427708080AvailableAvailablecontig_1559139 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55640.1 +2 9e-83 248 113/132 (86%) 13102.m06382 protein proteasome maturation factor UMP1 family protein, expressed
TAIR PP10 AT1G67250.1 +2 9e-42 142 68/129 (53%) Proteasome maturation factor UMP1 | chr1:25163808-25164967 REVERSE LENGTH=141