MLOC_10456 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.9737.803859.556410.2914
LEAShoots from the seedlings (10 cm shoot stage)2.665023.859292.336022.58609
INF1Young developing inflorescences (5mm)1.055611.006970.7405550.893132
INF2Developing inflorescences (1-1.5 cm)0.9089781.141180.6337591.18977
ROORoots from the seedlings (10 cm shoot stage)3.589944.053662.732684.89326
NODDeveloping tillers at six leaf stage, 3rd internode2.949192.214533.060867.77377
CAR5Developing grain, bracts removed (5 DPA)14.968316.518418.058218.9036
CAR15Developing grain, bracts removed (15 DPA)29.755327.668615.857668.8731



CDS Structure of MLOC_10456






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10456.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353630NoneNoneNoneNone
MLOC_10456.1CUST_886_PI427708080AvailableAvailablecontig_1559127 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g39875.1 +3 3e-126 368 173/199 (87%) 13106.m04138 protein ras-related protein, putative, expressed
TAIR PP10 AT5G55190.1 +3 3e-122 357 170/194 (88%) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221