MLOC_10408 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2720010.1190980.1063430.176701
LEAShoots from the seedlings (10 cm shoot stage)0.122752000.111237
INF1Young developing inflorescences (5mm)0.03060980.07133960.03918330.0546703
INF2Developing inflorescences (1-1.5 cm)0.1026990.1289160.1635180.179784
ROORoots from the seedlings (10 cm shoot stage)0.7864481.1487402.19116
NODDeveloping tillers at six leaf stage, 3rd internode00.01534400.144482
CAR5Developing grain, bracts removed (5 DPA)00.037173800.0661796
CAR15Developing grain, bracts removed (15 DPA)24.968116.206421.261259.5665



CDS Structure of MLOC_10408






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10408.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250206.1NoneNoneNoneNone
MLOC_10408.1CUST_879_PI427708080AvailableAvailablecontig_1559008 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g19770.1 +3 6e-77 240 156/231 (68%) 13101.m02149 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
TAIR PP10 AT4G16160.2 +3 9e-42 145 96/173 (55%) | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr4:9157545-9158738 FORWARD LENGTH=178