MLOC_10405 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains149.529187.728187.17191.049
LEAShoots from the seedlings (10 cm shoot stage)58.305650.865244.982547.1345
INF1Young developing inflorescences (5mm)98.5785103.988102.71790.6407
INF2Developing inflorescences (1-1.5 cm)82.815486.63283.616996.8685
ROORoots from the seedlings (10 cm shoot stage)175.085188.753192.738247.584
NODDeveloping tillers at six leaf stage, 3rd internode46.173244.21426.4168145.164
CAR5Developing grain, bracts removed (5 DPA)175.841160.099171.386172.919
CAR15Developing grain, bracts removed (15 DPA)45.682544.987946.3852107.665



CDS Structure of MLOC_10405






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10405.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365941NoneNoneNoneNone
MLOC_10405.1CUST_878_PI427708080AvailableAvailablecontig_1559000 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g14670.1 +3 0.0 1766 899/974 (92%) 13109.m01373 protein phosphoenolpyruvate carboxylase, putative, expressed
TAIR PP10 AT1G53310.3 +3 0.0 1637 826/963 (86%) | Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 | phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967