MLOC_10404 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains75.150260.477466.631963.5702
LEAShoots from the seedlings (10 cm shoot stage)61.113668.852166.132153.7698
INF1Young developing inflorescences (5mm)74.290489.894690.991168.4676
INF2Developing inflorescences (1-1.5 cm)83.547286.549192.799992.6974
ROORoots from the seedlings (10 cm shoot stage)112.807100.389102.787121.353
NODDeveloping tillers at six leaf stage, 3rd internode131.647100.783131.896350.42
CAR5Developing grain, bracts removed (5 DPA)76.248480.721883.319976.9466
CAR15Developing grain, bracts removed (15 DPA)21.228724.3523.605249.7783



CDS Structure of MLOC_10404






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10404.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374435NoneNoneNoneNone
MLOC_10404.1CUST_877_PI427708080AvailableAvailablecontig_1559000 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48280.1 -3 1e-98 293 142/148 (96%) 13101.m05001 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT1G16890.2 -3 1e-98 292 141/148 (95%) | Symbols: UBC36, UBC13B | ubiquitin-conjugating enzyme 36 | chr1:5776550-5778327 REVERSE LENGTH=153