MLOC_10400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains193.967138.152129.12167.142
LEAShoots from the seedlings (10 cm shoot stage)85.844547.926556.250957.9383
INF1Young developing inflorescences (5mm)261.704258.105275.582260.097
INF2Developing inflorescences (1-1.5 cm)262.681208.454259.073293.283
ROORoots from the seedlings (10 cm shoot stage)129.033150.251162.53195.398
NODDeveloping tillers at six leaf stage, 3rd internode13.856118.536449.951389.7182
CAR5Developing grain, bracts removed (5 DPA)167.698175.006165.386188.533
CAR15Developing grain, bracts removed (15 DPA)63.466963.94857.4189164.092



CDS Structure of MLOC_10400






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252412.1NoneNoneNoneNone
MLOC_10400.1CUST_875_PI427708080AvailableAvailablecontig_1558988 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47780.2 -1 4e-120 347 169/187 (90%) 13107.m05102 protein 60S ribosomal protein L18-3, putative, expressed
TAIR PP10 AT3G05590.1 -1 2e-108 316 156/187 (83%) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187