MLOC_10328 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.579713.990824.683222.3815
LEAShoots from the seedlings (10 cm shoot stage)10.96486.111384.233227.36612
INF1Young developing inflorescences (5mm)4.108284.749665.440094.84822
INF2Developing inflorescences (1-1.5 cm)4.281272.943143.919654.53749
ROORoots from the seedlings (10 cm shoot stage)11.74796.0120411.792311.3242
NODDeveloping tillers at six leaf stage, 3rd internode20.851723.054810.16189.441
CAR5Developing grain, bracts removed (5 DPA)6.020544.362445.452285.88967
CAR15Developing grain, bracts removed (15 DPA)0.7358320.3137260.2260051.33219



CDS Structure of MLOC_10328






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10328.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10328.1CUST_1624_PI427708083AvailableAvailablecontig_1558831 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37890.1 -1 6e-64 202 94/103 (91%) 13111.m03714 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT5G28840.2 -1 3e-62 197 91/103 (88%) | Symbols: GME | GDP-D-mannose 3,5-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377