MLOC_10317 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.402543.264553.970683.72282
LEAShoots from the seedlings (10 cm shoot stage)9.127933.88875.422915.16388
INF1Young developing inflorescences (5mm)3.344044.492284.34733.51625
INF2Developing inflorescences (1-1.5 cm)3.326584.133275.767284.64212
ROORoots from the seedlings (10 cm shoot stage)8.06677.341668.02138.83523
NODDeveloping tillers at six leaf stage, 3rd internode18.89724.267134.002175.8415
CAR5Developing grain, bracts removed (5 DPA)8.896479.5178610.08039.33522
CAR15Developing grain, bracts removed (15 DPA)1.071411.20461.207782.88702



CDS Structure of MLOC_10317






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10317.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10317.1CUST_1622_PI427708083AvailableAvailablecontig_1558810 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51510.3 +1 1e-55 181 84/96 (88%) 13103.m05604 protein ribosomal protein L6, putative, expressed
TAIR PP10 AT2G18400.1 +1 2e-45 153 69/96 (72%) ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102