MLOC_10280 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains64.782643.673651.546159.8515
LEAShoots from the seedlings (10 cm shoot stage)30.492146.512250.112238.9997
INF1Young developing inflorescences (5mm)4.873774.925446.467415.4473
INF2Developing inflorescences (1-1.5 cm)19.901519.758625.197328.4561
ROORoots from the seedlings (10 cm shoot stage)103.55982.605475.1513116.734
NODDeveloping tillers at six leaf stage, 3rd internode21.679336.609576.7025147.221
CAR5Developing grain, bracts removed (5 DPA)26.361725.515630.185434.0097
CAR15Developing grain, bracts removed (15 DPA)25.125224.875326.535773.0291



CDS Structure of MLOC_10280






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10280.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251610.1NoneNoneNoneNone
MLOC_10280.2CUST_854_PI427708080AvailableAvailablecontig_1558751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41260.1 +3 1e-68 223 159/279 (57%) 13110.m03844 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT1G70000.2 +3 6e-32 123 77/154 (50%) myb-like transcription factor family protein | chr1:26363674-26364635 REVERSE LENGTH=261