MLOC_10228 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.016540.789735.65832.7791
LEAShoots from the seedlings (10 cm shoot stage)36.319234.375634.427828.4653
INF1Young developing inflorescences (5mm)35.245437.260237.080329.4166
INF2Developing inflorescences (1-1.5 cm)40.788141.49341.426243.3646
ROORoots from the seedlings (10 cm shoot stage)23.525336.712535.054438.7074
NODDeveloping tillers at six leaf stage, 3rd internode34.176826.767128.553984.8347
CAR5Developing grain, bracts removed (5 DPA)36.62137.573838.354534.854
CAR15Developing grain, bracts removed (15 DPA)18.098417.513916.488339.2214



CDS Structure of MLOC_10228






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10228.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357840NoneNoneNoneNone
MLOC_10228.2CUST_845_PI427708080AvailableAvailablecontig_1558659 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12300.1 +3 0.0 976 510/567 (90%) 13103.m01402 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT2G01690.1 +3 0.0 823 429/564 (76%) ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743