MLOC_10222 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.018331.940531.751729.332
LEAShoots from the seedlings (10 cm shoot stage)37.261538.371937.087133.2236
INF1Young developing inflorescences (5mm)61.531260.98160.184549.7483
INF2Developing inflorescences (1-1.5 cm)83.366287.328678.98687.7478
ROORoots from the seedlings (10 cm shoot stage)23.845439.140328.726745.5358
NODDeveloping tillers at six leaf stage, 3rd internode18.475528.427328.197898.1528
CAR5Developing grain, bracts removed (5 DPA)44.563742.245345.632440.2636
CAR15Developing grain, bracts removed (15 DPA)23.694822.912722.312549.6301



CDS Structure of MLOC_10222






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10222.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10222.2NoneAvailableAvailablecontig_1558649 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67250.2 +2 2e-115 385 217/397 (55%) 13101.m07295 protein Rad21 / Rec8 like protein, putative, expressed
TAIR PP10 AT5G16270.1 +2 1e-30 131 89/253 (35%) | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031