MLOC_10146 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8786460.468220.5588350.536163
LEAShoots from the seedlings (10 cm shoot stage)0.3420891.187071.361830.648862
INF1Young developing inflorescences (5mm)0.4326270.4910150.3888590.335499
INF2Developing inflorescences (1-1.5 cm)0.5352830.6533690.6280240.594471
ROORoots from the seedlings (10 cm shoot stage)0.4703420.9994020.8375380.773718
NODDeveloping tillers at six leaf stage, 3rd internode0.8197380.7490660.7582291.29864
CAR5Developing grain, bracts removed (5 DPA)0.3059010.2012450.2124630.185904
CAR15Developing grain, bracts removed (15 DPA)0.21962100.04470960.262947



CDS Structure of MLOC_10146






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10146.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367710NoneNoneNoneNone
MLOC_10146.1CUST_830_PI427708080AvailableAvailablecontig_1558503 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g02800.2 -1 2e-25 105 62/138 (45%) 13112.m00226 protein CRP11 - Cysteine-rich family protein precursor, expressed
TAIR PP10 AT5G58240.2 +1 4e-15 76 53/103 (51%) | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:23558349-23559171 REVERSE LENGTH=160