MLOC_10119 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2018250.3918110.4587220.315137
LEAShoots from the seedlings (10 cm shoot stage)0.5438850.2714180.4501160.338418
INF1Young developing inflorescences (5mm)0.5161170.7924380.2903850.422213
INF2Developing inflorescences (1-1.5 cm)0.9976831.068521.278521.09818
ROORoots from the seedlings (10 cm shoot stage)0.2374530.3394170.1356520.322229
NODDeveloping tillers at six leaf stage, 3rd internode0.1269040.06772340.292460.320327
CAR5Developing grain, bracts removed (5 DPA)1.915891.446511.687341.46902
CAR15Developing grain, bracts removed (15 DPA)0.3850180.2813410.1766230.651021



CDS Structure of MLOC_10119






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10119.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10119.2CUST_8583_PI427708080AvailableAvailablecontig_1558455 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41120.1 +1 0.0 582 346/510 (68%) 13110.m03826 protein expressed protein
TAIR PP10 AT5G47400.1 +1 3e-102 343 256/711 (36%) unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19229162-19232586 FORWARD LENGTH=862