MLOC_10100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1950420.7547130.5633430.493292
LEAShoots from the seedlings (10 cm shoot stage)0.7963050.5307810.7189450.559699
INF1Young developing inflorescences (5mm)2.05952.043342.45511.62569
INF2Developing inflorescences (1-1.5 cm)2.334542.244072.440882.26996
ROORoots from the seedlings (10 cm shoot stage)0.06276460.4539130.4578280.421953
NODDeveloping tillers at six leaf stage, 3rd internode0.01536740.005913990.01003950.0227664
CAR5Developing grain, bracts removed (5 DPA)1.055821.154791.249470.989316
CAR15Developing grain, bracts removed (15 DPA)0.2953520.3852750.2046950.63315



CDS Structure of MLOC_10100






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10100.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10100.2CUST_8580_PI427708080AvailableAvailablecontig_1558427 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42354.1 -1 0.0 640 306/431 (71%) 13107.m04420 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT5G39710.1 -1 6e-69 247 138/464 (30%) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747