MLOC_10050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains126.87589.267792.5344100.557
LEAShoots from the seedlings (10 cm shoot stage)63.05533.961939.315437.1654
INF1Young developing inflorescences (5mm)0.2195990.2543250.1227080.187904
INF2Developing inflorescences (1-1.5 cm)0.2101090.1011260.03183810.14852
ROORoots from the seedlings (10 cm shoot stage)174.736173.68116.17186.082
NODDeveloping tillers at six leaf stage, 3rd internode282.95561.1443.167941199.34
CAR5Developing grain, bracts removed (5 DPA)1.321851.067780.5306310.991673
CAR15Developing grain, bracts removed (15 DPA)2.208282.170243.009576.05392



CDS Structure of MLOC_10050






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362098NoneNoneNoneNone
MLOC_10050.1CUST_822_PI427708080AvailableAvailablecontig_1558320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40700.1 +3 8e-145 422 197/245 (80%) 13110.m03773 protein expansin precursor, putative, expressed
TAIR PP10 AT1G65680.1 +3 1e-67 222 113/238 (47%) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273