MLOC_10046 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains88.433865.415978.095578.1387
LEAShoots from the seedlings (10 cm shoot stage)33.066122.164322.636820.5814
INF1Young developing inflorescences (5mm)19.975119.526817.336417.7394
INF2Developing inflorescences (1-1.5 cm)11.686113.911914.083816.0298
ROORoots from the seedlings (10 cm shoot stage)80.14147.059453.244559.0197
NODDeveloping tillers at six leaf stage, 3rd internode42.809236.968132.097593.6796
CAR5Developing grain, bracts removed (5 DPA)61.486465.784468.06671.0621
CAR15Developing grain, bracts removed (15 DPA)17.346813.83514.909539.931



CDS Structure of MLOC_10046






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10046.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373612NoneNoneNoneNone
MLOC_10046.2CUST_821_PI427708080AvailableAvailablecontig_1558298 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g32170.1 -1 0.0 650 313/394 (79%) 13103.m03668 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT4G24220.1 -1 1e-152 449 223/394 (57%) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388