MLOC_10028 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.970080.9274631.16961.14671
LEAShoots from the seedlings (10 cm shoot stage)16.420131.251121.773221.5973
INF1Young developing inflorescences (5mm)3.341842.710473.207642.94909
INF2Developing inflorescences (1-1.5 cm)3.197062.413963.285023.54802
ROORoots from the seedlings (10 cm shoot stage)0.4272590.3358681.009310.580545
NODDeveloping tillers at six leaf stage, 3rd internode19.027617.606318.116360.8834
CAR5Developing grain, bracts removed (5 DPA)5.103936.320396.761596.90528
CAR15Developing grain, bracts removed (15 DPA)0.6788680.9864021.16862.45176



CDS Structure of MLOC_10028






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10028.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359167NoneNoneNoneNone
MLOC_10028.1CUST_815_PI427708080AvailableAvailablecontig_1558269 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53490.1 +2 6e-172 492 254/326 (78%) 13104.m05507 protein OsCHL Chloroplastic lipocalin, expressed
TAIR PP10 AT3G47860.1 +2 7e-134 394 213/343 (62%) | Symbols: CHL | chloroplastic lipocalin | chr3:17656778-17658269 REVERSE LENGTH=353