MLOC_10017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.0539341000.0546549
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.0728600.0386105
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.017156500.142448
CAR5Developing grain, bracts removed (5 DPA)1.603031.091890.9993331.20643
CAR15Developing grain, bracts removed (15 DPA)0.06185260.03281820.04612920.118714



CDS Structure of MLOC_10017






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10017.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373186NoneNoneNoneNone
MLOC_10017.3CUST_813_PI427708080AvailableAvailablecontig_1558239 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54160.2 -1 2e-111 340 190/308 (62%) 13102.m12340 protein AP2 domain containing protein, expressed
TAIR PP10 AT1G53910.3 -1 1e-34 134 83/180 (46%) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356