MLOC_10012 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.513242.864362.290952.82207
LEAShoots from the seedlings (10 cm shoot stage)1.369020.1122770.1601460.502159
INF1Young developing inflorescences (5mm)7.926586.309896.497496.02061
INF2Developing inflorescences (1-1.5 cm)7.434919.156517.554459.24715
ROORoots from the seedlings (10 cm shoot stage)0.5964422.021921.632822.32161
NODDeveloping tillers at six leaf stage, 3rd internode0.01747380.02177780.006433910.0708267
CAR5Developing grain, bracts removed (5 DPA)2.990412.991312.723442.95333
CAR15Developing grain, bracts removed (15 DPA)0.6822050.2781590.325241.09183



CDS Structure of MLOC_10012






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_10012.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_10012.1CUST_8563_PI427708080AvailableAvailablecontig_1558231 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g16610.1 +2 4e-167 504 344/736 (47%) 13108.m01775 protein Rad21 / Rec8 like protein, putative, expressed
TAIR PP10 AT3G59550.1 +2 4e-58 211 221/723 (31%) | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693