Map Locations of contig_99933 (6351 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_99933

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_82111 1 1249 bp AK374578 Available Available None





CDS Structure of MLOC_82111






Contig Sequence (6351 bp)

>contig_99933 6351 assembly3_WGSMorex_rbca.fasta
GGAACCGTCAAGTTCTCGTGCGGATATGATAGATCGACTTACAGAGGGACTGCGGGTTGA
ATACCCAAAAGTGGAGGTGCTTTTCTGCAAAAATGCCGACGGCGGACGACAGAAGCGCTA
CGCGCTTTATTATTAGGGGAGATTGTCTCCTTGGTCCCATCCTCAAGAGCACGGCGTCTG
TGTATGTACTGTGAGTAATGCACGACAAAGGGGTACGGCCGTAGAAATGTTTTTATGTAT
GTATGTATGTATGTATCCAAGTAGTTTGCCTAGTCATGAATGTATGAATGAAGAATTATA
ATGTATCGATCATTCTGTTCCTTTCAAGCCAATGGTAGAAGTAATTTCTCAGAAGGGAAG
ATATCAGCGACGAATTGTGATGTCATTTTAGTGATCGGATATGTGCCTCGTGAGTTGGGA
AGCCAAAGGAGCGTGGGACAAATTCATTGTTTTGTTAGCCTCTATGCGTAAAAGTTTTTC
GGATCCGATCATTTTTCTATCTCTATTGTCTTTGGCCTACCACCAAGACCTTTGATGGTA
GGATTAACTTACACCACCGCGCCGGTTCGATGCGAAAAAAGATCTTACTGTCATAGTCTA
TGGCGGTAGGAATTTGCATGCAATTATAATAAAATGATAATTGCATGTAGGTCCCTATCG
TCATAGTTGTGGCGGTAGGGTATTTTCGCATCGTATGGACATGTCGGTGTTAATAAGTTC
TACCGTCAAAGATTTTGACGGTAGGTTGCGTTACCCTACCACCAATAACAATGATGATAG
AAAATGATCAAATACACAACAATTTTGCATATTGGGTCAAATCGTGCTAAACAAACAGTA
AAAGGGTCCAAATAGTGATTTTGGCTGCATGGGGGCACCAAGAGAGAAATATTAACGACG
ACGATCGGCTATGGACTCGAAGCTTCTCCTCCTTGATGAGAAGGAAAGTAAATGGCGCCA
ACGGACGGACGAAGGGGCGTGGCCGCCCATCGGAGAGATGTAGCAACCGGCCAACCATCA
CGAGGTTCCCTCCATAGCCTCCCGAACAGGGGTAGCGATCATCAATCACCCTTCCATGTC
GTGTCGATCGCCCTTATCGCTCGCTGGCTGGTTGCTATATAGATAGATATGAGAGCATGT
ACAGCCAAACTGGGCAAATATGTCCCTATACGTCCGGTCAATGATCAGGCGTCTCTCCTA
TTTGTCTGTTCGTGCAGTCAAATTCCTAAATTTCTTTTTCTTATATGTTCGGTCACTTGC
ACGTGATTATGAAGAGGAAGAGAGAGAAAGAAAATAATGAATGAAGAAAAAAAAAGATGG
TCTAAGGTGGAGTCGCTCCTACGTGATGGACTAATCGAACGCGCCCGCAAGCTTCATATC
CTCTTTATATTTGTTCTTAATATGAAGGTTCGTGCACAACTCAAACATAATGATGATAAA
AGGGTCTGATTGAATTATTATTTTTTTTGTTTAGTCACTCATAGAATGCATTCACGAACA
TATGTAAAGAAAATTGAGGCATCCGGTTGTAGATGCTCTTGCTACTTGGTAGATGGATAT
GATATCCCCATCCCGGTCCTCCACTTGCCCGTTTGTTTGTCTAGTGTCTACGGCGCCCAC
ACGCCCACGCCACACGACGGCGGCTATACCTATACCTCGTCCCGTCTCACCCTTGGTGCC
CGCCAAGCGCCGGCGGCCGCGGTTCTCGACCTCCTTTTCTTCCCTTTTTTTTTCTTCCAA
TCATTGGGTGTTGGGATGGGACAGGATAGGATAGGATCATCTCGTGGCCGGAGTATACAG
TTCCCTATATACCAGGGCTAATCAGAAATTTAATTAGGCTTTGACATTTTTGATTCCTGG
TAGCAGCACATGCCGTAAGCTGCCCCAGAAACTAGTCGTTCATCTCGATTATGCCGATCG
ATCGATCTTTCTTCGATTATGCCGTGCATGCATGCATGCATGTGGCCGCTGCGTGGGCGA
CCATACCTGATGGCTGATAGTATACCCCACGAATCCGGCGACCAGAGGAAAATGCTGGCC
ACCACGCTCGCGCCCCTCCAGCGACGACCTACCCCTTGCGACGTGGACGTGACGTGGAGG
CCTAGGCAGCGCCACCTATGAACTCCACTGTGCCGATACTGCCACCACCTATATGAACTC
CACTGTGCCGATACTGCCACCACCTAACTGTTTTCTGATGGAGTGATGGCACGGCACGGG
CAGCAACGGAAAACGACGCCGGGCCATGGCACGGCAGCCAGGGCAGGGCACCACCTGACC
TGTGTACGACTAATTAACTGAGGCGATGCCGACCAAACGCCACGGCGTCATCGTTCACCA
GCGGCATCGCCGTCAGCTCCTTATCGGATCCTCGTAATAAAGCTCGGGGATCCGGCTGGC
CAGACTCCATGCAGCCGTCGGTTTCGGTTCCTTATCGCCCGCCGGCGACCGTCCGTCCGT
CCGTCCAGCGGCGGCTATATATCGCCGTCGTGCATGAGGCCGCGAGCGTGTAGCCCATAT
ATAGGGTTTTTTTATTAGAAAAATAAAACTGCCTATGCGGCGGCTTGTCGCAATGAGCCG
AACACAAAAATACATCATATGCAGGTGAAAAGCATATGCTGTCATACGTTAAAAAGATGT
ATCAGAAGCAATGCTTTAAGGAATATTCGTGTGTTCCACAAATTTTTTTGTGAAAATTGT
ACAAATGTTTATACATGTAAAAAAACATTCGCGTAGTTTAAAGCAAAAATGTTGTCACTT
AAAAAGGTACAACAATAATTTTCAAAATAATAATATTCCCATGTATTCGAAAAAGCGCTT
GAAAATGTATTAAGAAATATGTATCATGTATGTCTGAAAAATGTCTAACGTGTACTGAAA
AAATATTTCATGCGTGCTCTAAAAATGTGCATTTTGTACCGAGGGAAAGTAGACATGTGT
TTGAAATAAAGAAAACTGATAAAGAGCCGACAAAGAAACAGGGAATCAAGGAAAACAAAT
GAAAACAGAAAAAAGAGCTGAAGCAAAAAGTAAAAAGGTGAAGACAGAAAACAAAAAAAA
TGAGAATCCCAAAATAAAACCAAAGTGAAAACCCCCACAGGAAACAGCTATGAGTTGCAG
CGGCCGAGCGAGAAATAGGCCGACTTGCTATGGTCGGTACGCTAATTTCCCACCCTGGGC
TTGAGCGAGTGGTCTAGCATAATACTATAGCGCCTCTGCTTGAGTTTCTTCCCCTTTTAT
TCTCTGTATTTTTCATATTCACGCTTATACTTTTCTTTGTTTTTTTTTGCCTTTTCTGTA
TTCCTCACTGAATTTCACACTTTTTACCTTCCTTTTATCAACGTATATCTATTATTTCAG
TACGTCTTGTACATTTTTGGTACATGTGGAACATTTTTCTAATACACGTTCACCATTTTG
AAAATACGCATTGTACATTTTTTTCCAAATACTTGTTTAAACATTTTTTGAATAGATATA
AACATTTGCAAAATACACGTTGAACATTATTGTAGTTGACCAACACAGTTTCATATATTG
TATAAAAATAAAAATCTCCACAAACATTTTATTCTACATTGTAGAAACATTTTTTAAATG
CCATGACCATTTTGTCAAACACTTGAATATTTGTCTTAAAATGTCATGTACATTTTTTTC
TTCATGGTACTTCACATATTCTTATACAACACACACTTTTGTTTTACATTGTATAGTCAT
TTTTCTGAAAATGTCGCACACTTTTTTGAAATGTCACGTACATTTTCAAAAAAATTGACA
TGTCCCGTAGTTTTTCTGAATGATACAGTTTTGTTTAATTATGTGAACATTATTTTACAC
TGCATAAATATTTTAAAATGTCATGAACTTGTTTTGAAAGACGTGAGTATTTCTTTAAAA
TTTAAAGAAAAATTACGTTGTATAGAGGTTTTGAAAATTTCACATAATTATTTTTTAAAT
AAGTGAGCATTTTTTGAAGTTTCAAGTACTTTTTTGAATGATATGATTTTTTTTGTTATG
TGAACACTGACATTTTTGTAAGTGCATTTTTTTTTCAAATGTCATGAACATTTTTAAGAT
TGCGCGAACAATGTTTTACCCTGCATAACATTTTTGAAGACTTTAGTAAAATATGTATCC
ATTTTAGAAATATAACCAAAGTAATAAAGGAAGGGGAAAACAACTCTGGACCCCGTGATA
GGTTGGCCTATTTAAGGGGGGGGGGCTTATGAGCGCGAGGGCTTGAGTATTTCTCGATCT
CATGGGAGCCGACTACGACACTAAGCTTGTTGACATCGACGGCTTGATACGGGCTATGTC
ATAGGTTAAGTGGTCCACCCCGAATGACTCTGATTCAACAGCCGTAATCTTTTAGAAGGC
CCCGCCACTGATTTCCCTCGCCTCACGGTGAAGGAAATTGCCTTATACACCATCAAGTTT
TTTTGTCATTTTTGAACGACATGTTATGTGCCTATGGCTTGGGATCTCCCTTTGCCAAGT
CAACCCTCATCGACGACGACTAGGAAAAAAGGTGCCCACTATGGCTCTTCCAAGGGGAAA
CAACCCATCTGCGACATCACAGAGCACCTTGTAGCCGTGCTCGTCCAAGGGGAAGGAGCC
CATCCAGGACCAGTGAGGTAATATCCTATGAGCAAAATATTGCTTTTTCTAGCTAGCCAA
GGAATTTATATCGTGAGGCTAAATTGAGAGCCTCGCTTAATGAATTTGAGAAGAATTTTG
AGGGAGTTGAGTCTGATTCAGATGGCAAGTTAACCATCATTAATATTCCTTTGAATTCCA
TTTTACCAAGGGATACAATCTCTTGTGAGGTTGAGGTGGTTAATTCTGATTTTATTTTGA
ATTTTAGTGATAATGATGTGATGATACAGAAGAGAGACACTAAGTTGCAAATATGTTATG
CATATATATACTCATCCTTGGGGAAGGTTCAAGTGTTGCACACAAGTTAAACCTTGCAAT
CACCAAGCCACAATCCCAAACCATGTTTTTATAGGTGTTGAGTTATACCTTGAGTCTTAC
CGGAATACACACAATAACTGTTTCTAGCATGGCAAGCATGCAAACACTAGGTCACGACAG
GAAATGCTAGCTTCACGCAGAGCTGATCCTACGAGCTGGGTGGATGCAGAAACGGATGCA
TCTATGGAAGGGGCAGTAAATGGCCATGGCGCAGCGTGGGCCGGAGCAGGAGCGGCTGCT
TCCTCGGGATGACGAGCCCCTCCCCCTCCTCCATGTCCAGCGGCGGGGCGGGCACCTCCC
AGTCGAAGCACTGCACCAGCGCCGCCAGGAATGCCGGCACGGCCAGCAGGGCCAGCCCCA
TGCCGGGGCACGCGCGCCGCCCGCTCCCGAACGGCATCAGCTGCAGGTGCTGCCCCTTCG
GGTCCACGCCCTCGCCGGCCCCGCCGGGCATGAACCGCTCCGGCCGGAACTCAAGTGGGT
CCTCCCACCACGCCGCGTCGCGCCCAATGGAGTAGATGTTGAAGAAGACGGACGTCCTGG
CCGGGATGGTGTACCCGCGCACGCGGATCGGCTCCACCGCCTCCCGGTGCGCGATCACCG
CCGGCGGGCGCAGCCGCAGCGTCTCCTTGAGCACCGCCTGCAGGTACGGCATCTGCGCTA
CGTCCGGCTCGCCCACCACCCTGGACGCGCCCACCACCGCCTCCAGCTCTGCGCGCAGCT
TTTGCAGGCAGTCCGGGTGCGTCAGCAGCTCCGCCAGCATCCACTCCACGGTGGTCGCCG
TCGTGTCCGACCCGGCCGTGAAGATGTCCTGCTCGTTTCATTCGACATTAGACAAGCTGA
GCTCACTCTGATGTCCGACCGATGGACGACAGCACGAGGAAGAGAGTGTGGAGGGAGTAC
TCACGAGGACGAAGGCCTTGATGTTGTCCCGGGTGAGCTTGACCTCGGCGGCGGGGTCTG
CGGCGGCGTCCATGAGGATGTCGAGCAGGTCCTTGGTGTTGCCCCCGTCGGCGCCCTCGC
GCCGCTCCTTCTCCTTGCCCCGGATGATGGACTCGAGCAGCGCGTCGAACCTGGCGTGCA
CGCCGCGCGTCCGGCGGGACAGCCCCTGCAGGTCCCAGCCGCGAAACAGCGCCACGTAGT
CCTCGAGGTTGAAAGCGCCGACGAGCTCGGCCACCTGCTTGGCGCAGTCGCGGGCCAGGT
CCGCCATGTCGCCGGGCAGCGCGCTGGCCACCATCCGCATCATGGCGTTGTTCGACAGCC
GGATGAGCTGCCTGCTCACGTCCAGCGCCTCGCCCTCCGCGGCCGCCGCGGCGGGCGCCG
CCCCCGCGCCCGCCGCGGCCGCGCGCGCCGGGGGGGGCGGGGCGGCCGGGG