Map Locations of contig_99836 (9725 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_99836

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_82092 3 2385 bp AK357204 Available Available None





CDS Structure of MLOC_82092






Contig Sequence (9725 bp)

>contig_99836 9725 assembly3_WGSMorex_rbca.fasta
GGGCAAGGCGAGGCGAGGGCTAGATGAAGGTGGAGAATGACCAATGTGCCACCAACTAGC
AGGCCAGGGAATGGTGGAAGCGTGCGTCGCGTGTCCATTTTGTGTCCGCGCCGATCCAAG
TCAGGCTCAAAATTAGGTCAAAAATGGGTCGACACGCAGACGAAAAGCGGACGCGCGTCC
GTTTGGCTTGACGTGTTCGGTCGTTTTTATGTCCGCGCAGACCCAAACGAACGACGACAA
ACGAAATGGATCGTTTCATAAAAATTACTCTGATATCATTTGCTTTTATTTAATACTGTT
GAATTTGGATAATTTGTATAAAATGATTAATGTGTATAATTTTGTTGAATTTAAGAATCC
GAATATAAAATATGTCGATGCATCGAACGAAATATAAGTTGTCGTGTGTATGCGGGCGTA
CAGGGGCCGAATTTGCTGAGTATCCTAGATGCTCTTACATTAGAGCTGAGAAGGGACGTC
GACAAAAAGGCCGCCTGCAGGATGACAGGTAAGTACTCACTGACAGGTGACAGCACGCTG
CGTGCCTGCCGCGAGCGCCTTTCGCTTTTCGGCAACAAGAAGCCTGACACGCCTGCAAGC
ACACTGTGCAGTGCCGGTACATTTCCTCACTGCACGTAAAGGCGCAAGCAAACAGTGCGA
CCGACCCATCCACGATCCACCATCACAGTTCACAGATAGGAAAACTTTCTTGCGTGTACA
TATTTCCTATCCTCTCCTCTTCACCACGATAAAAAAAAAAAGCATAATCCTACACCTACG
TAATTTGGTTACGTAATTTTACTTAAGCTTCATGATCTAAATCTCCACCGCCCCTGATTT
TTGTGGGGTGGGGCCTGGACTGTTTTTCATCCAATCTAATCATGACAAATCAACTATCAA
GTAACTTTACCTAGAATCTTTATGTAGGTGTAGCAAAGTCATAAAAAAAAAGAGACAAAT
TGCAGCAAAACACGAACCGTAAGCCTTTATTCCTTCCTTCACTTGCAAACCCTGTGTACA
AAGCTAGTTACAACTTACTACAAACACAGCAGCACGCCTCACGCGGCCAGGAGGTACCTG
AACCTGAACTCGTAGGGCAGGACCTGGATGCGGCGTCCACGGCGCGCGTCGGCGGCCACG
GCGCGCATGGCGGCCTGCCGCAGCTCGGGCGGCAGCTGCAGGCACACCCAGTCCATGAGC
GAGTCCACGTCCTTGGCGAAGTCGAGCAGGTACCAGTGCAGCAGCTTGGGGATGGCGAGG
CTCGCCGGCGACGACACCCCCACGGCCGCCTGCAGGTAGTCCCGCTTGGCGCCCTCCAGC
TCCTCCTCCACCCGCGCCGCCGTGTACACCCTCACCTTCACCACAGCAAAAGAAACCAAG
TCAAGACATCACCGTCGTCAGTACAATAGCAACTGCTGGGATCGAGATCGAGAGAGAGGG
AGAGGCCTTACGGCGGGGGAGGACCAGCTGCCGCAGGAGAGCGCGAAGGTGACGAGCGGC
TCCGGCCACTCCAGTCCGAACGCGCCGCCGCGCGCCGCCGCGTCGTCGCCCTTGGTTCCT
TCGGCCTCAGGGCGCACCTGCTGGACGATCACGGGTCACACGTTCAGCCACGGACGGACA
CTTCATTCCACTAGTGCTAGATACGATACCAATGGTGGCGTTATCGACGGTGACAGACTT
ACGTGTTTGACGCTGTAGGGCAGGCGCAGGATGAAGTGCTCGATGGACATGGCGCTGTGC
GTGCGCCCGCCCACCTCTACCGTCGCCTGCAAACAAAAAGAAAGCGATCTTCAATCTTAC
TGCAGGCATTGAGGCATTGAGGCATCGAGGAGGTAGGGCAGGGACGAGGGATGTATGTGG
TGGTACCTTTGGCATCATGGCCACGAGCATATGGGGCGTGGTAGGTATCCCTTGCTCCAG
GAACGCCTGCAGTACATGGCAGGCAACCGCAAGTATATTAAACTCACCTCAGATCCAGCA
AGGAAGTAGTACTACGTAGTAACTTGAGCCTACTAGTTCAGGTGATGATTAGGGGCAGGG
GACATGAGCCACTTATACTACGGACATGAACCAAAAGTATAAGCACCATCAACGAACGAA
CCAACATGCCAGCAATGTACGTACTACGTACATGTTCAGACTTCAGAGTCCAGTTCAAAC
TTAATAAAAGAATAAGTAAAGCACGCAGTAGAACTACCGCCGGTACCCATGCTGTACTTC
AGTAGTTATGAACCAGCTCCCCCAAAAAAGCTCCAGCATACCACAAACAGTGGTTCTACG
AAAAGCGACGCTGATAATTGGGCTACCTACAACCGCCCCCCGGAAGACGAAATTTCACGC
CAAACAGTCTTAGACTGACGACGTGAATAATTCAGGGAAACTACTAGTACTAGCCGGGAG
ATGGCTACCAACGATTACGGGCGGGTGGGTGTGTGGGTGCCAGCGGAGCTCACATTCATC
ATGCACGAGTTGTAGACGTTGATCCAGAAGGCGAGCTTCTGCTGATGCGAGAGCCCCGCC
GGGTCAACCGACGCCAGCTTCAGCAGCAACGCCCTGCACAAGATTCGCCGGACAAGAAAC
CCACTCGATCAGCAACGCCGCCGGGTCAAACGGACAACCGAATCCAGCTCCAATCAAGAT
GGATGGATGGTGGCCATGACAGCGAGCTCACTCACTTGAGCCTCCGGGCGAGCAGCGTGC
TGCTCGCCAGCGCGTTCCGGTCGAAGGACGCCGCGTCGATCACGTGCAGCCGCTTGTAGG
GGCCGACGTCCCGCCCGCCCAGCTCCAGGATGCCGTAGGGGTCCTGCGGGTACGCGTCCT
CCGACGACGAGCCTGACACCGACGGTGACAACGGCTGCTGCTGCTCCTCGTCCTGCTCAC
CGCTGGGGAGCGCCGGCGGAGCTGCCGAGGAGCCCATCTGCGAGAAGATGGTCAGCAGGC
AGCTCAGCAGCTCCTCCGACAGTCTGTTGGGCGCGCTCGAGCCGTCGTCCGGAGTGGCCG
CTCCTTGCTCTGAATTATTGCCGGCAGCGTCTGCGACCCTTTTACGGTCAGGCGCCGTAC
TGATCGTCTGTGTCAAAAAGATGCAGCGTTGCAGCACGAATTCAGCAAACTTCCCGTAGA
GACAGGGAAGAATATTTTGGGGACAATTCAGGCGCAGTAAGGCTGTAATTCGCTGGTTTT
ACCTGAGGAGCAGCCCTGCGCTTCTCTGGCGCGGGTACCCTGGATTTGGCGGTGGCCTTC
TGCGACGGCGACAGGCGGTAGCTTCTAGTCGAGGTGTTGCTGCACGACAGGTTCTCTTTT
CCTGCCCCGGCGCCGGCGGAGTGGTCGTCCTGGTTCGCCGGACCGGGAATCGGCTTTCTT
GGTGTCTGTGTTTGCTTGCCGTTCGGCGACGGACGGGCTGGAGCTTGATCTGGACCACGG
TGCGCGGTAGTTGGAGAGAGCTCTGCATTTCGAGTTGGGCTCGACGGCGTGGGCTGCGCC
GGCACGCATCCCTCGCCGCCGGGGAGGTGCGCGTTCTTGGCCGAGGAGAAGATGATGGCC
TCCTGGTAGATCCCTTGCCGGAAGTTGACCACCTGCTCCTCCAGCCGCACCACCTCCTCC
TCCAGCACCGCCACCTCCGCGAGAAGAGCCAGCGTCTGCGCATCACAACTCAGTTTTACA
ATCGAATTGGTACAAACGGAAATCGAATTGCCCAACGCGTACGCAGAACGTGGCGCTACT
GACTTGAGACGGCAGGTACGGGGGGAGGCGAGGCAGCGCGCCCAGCGGCCTGGTGAAGGC
CCGCTCCAGAGCTCGGTGGACGTTCTCCTCGTGCCGCAGCTTCTTCTTCAGCTTCTCCAC
CTAGCAGAATTTCCCCAGCACCGTCACAACCAACGCAGTGCAGGCAAGATTCCTTGCATT
CGACAAGAAATGAGAGAGAATTCATTTCACCCACGTCCTGCTGCAGCGCGAGCTTCCGCT
CTCTCCTCGACTGGATTCTGCTCGCCATGCCTCTGGCCGCCGCGTTGGCGGTCGGTGCCT
TGGCCGGCATGGCCTTCCTCTGCTCCTTCTGCATCATCTGGACGCAAAATGCCATCAGGG
AAAAGAGCCTCATCCATCCATTCGGCTAGCTGGCTGTCAAAGAAACTACTAACAAAAGCA
AAGCGACAGATTCCTGGCTGTAGTCCCCGGTCGATTAAAGGTAAAGCAAAGCGGATTAAA
GAGGGGGGAAATCGGGGCTCGGCGGCGATCGGGAGGGCACCCAATTCGAGCTGCTCCCTA
AAGCAACCGATGCCGTGTGGAGACGAACGAGACGAGCCCTGCCCATATGGATCGTCGCTT
GGCACTGCACGAACACCAAACGAAACTACAGTGCTGGCCGATGTACTCTTCCGCGTTAAA
TAGTCCGTCGGACAGAAAACAACATGGACGGTGCAGCAGATTTAACAGCAACAAACGCTA
AACAACCACGGAAAGGCGCACGGGAACCCAAGGGGAAAAAGGGAAAAACATTCAAACACG
GAGTTCGAACGACTGAACAGACGGCAAAGCCGCAAGCTTTCCGATCATGCGGGCGGTGGC
TACCGAGGGCGACCGGGGAATCGAGAGCCCCGCACGGAAACCCAAGAAATAACCGCACAT
TGTCACCTCCTGGGCGCTCAATTCCACGAACAAAGGCGCGCAATGCTAATTCTAATCATC
CAAATGCAAGTGGCGGAGCCAGACGTCGCGGAAGAAGCGGAGAGGCAGGGTTGAGGAGGC
CTACCCTGTCGCCCTTCGGGGCAGCCTTCGCGCCGTGCGCCGCCGCCGGCCTCCGAGCCC
GGCCATTCATCTCCGACGCCGTGTGCTCGCCTCTGTCAACAGTCAACACCAAGTGGTGCG
TGCGCTGCGACGGAGCGGAGCAAGGAGCCTGCGAGTTAAATCCTCTTCGTGGCGGGCCTA
CGGACCGCGGGGGAAGTCTCCAGCGCCATTAAAGGCACCGCGAGCTCTGGCGGTGCTCCT
GGGCGGCGGGAAGGGGCGCGCGCGGTCCAAGCCACCGCAAGCGCGGCCTCTGCTGGCGGA
TTCGGTTGGGTAGCGTTCCCGATTGGGTTAAGGGCAGGATTGGTTGGCGTGCGTGGGAAT
TGGGATTGCGGCGATGGCGATGCGTGGCGCTCTCGGCTCGCGGTTGGCCTCTCTCTCTCT
TCCCTCGGCCGTGGGAATGGAGTTTAGCTCGCAGGTTGCAGAGCGCAGCCCCCTTCTAGT
ACTAGTTGCGCTCTTGCGGAAGCGTAATTAAGCTCTCACGTTTTGCAGGCAGAACCCTTG
GTAAATATGTATTTCTTTCAGTGTATGGATTCGTATTTACAACTGTTTTCTCGGCGATGA
GTTGTGACTATTTGTCGATTGTTTCTACATAACGAAAATGCATATAATCAAAGAAATTCC
TCTTACAAAGAGTAAAAGAAAATAAAGGTGAAATACAAATAAATAAAGTTCGAATAACCC
TAAACCTGAGGAGGGCAATCCTAAGACCATGCTGCCATCTATGTCGGGTAATTATATCCC
TCGCCGTATCTTCCAATTGTGTACACATCTCCATAAGCACGTCTCGATTCTTCACACGTT
GTAGATAGAACCATAAACGAAGAGTCCCGGTACATCTGTAGATAACCTGCATAGCAGAAA
TATTTTTATCATTAAAAACTTTATCATTTCTATAGAGCCAAAGCGACCAAATAACGGCAA
ACGCTCCACCCTTAGAAGAGTTCTAAACATGTGATTAATCTCATGTGACTACTTGCCAAA
TATATTAGCAACACTACAAGAAAGATACAAGCGAGAAGCTATTTGGATGACTCGCCATAT
AGGATGAGCCAATTTACATTGGAAGAACAAATGTTTCATTGTGTCATCATGCTCACAAAA
TACACATTGCGTACTTTCATACCAATTCCTCTTAATAAGGTTATCTTTAGTAAGAATGAC
TCCACGACGAAGATACCGTGCAAAGATTTTATTCTTAAGTGGTATCTTCATCTTCGAGAT
CTTCTTGTTATTATCAACTAGCACATCACAATAGAGTACGACTCTATACATAGACTCCAC
TAAGAATTGTTCATTCCCATGTAGGTTCCAACAAAATACATCGGACCCATATGAGAAATG
TACCGTGGACAACCGCTGAAGCAGGATGTTCCATGATTGGAGTCTCGGTCCAAATAAATC
TCTTGTGAACGTCACATTTGGCAGAAATGATTTCAAAACCATGGCGATAGTGTCACCTTT
GTGACGCGTAATGTTGTATAGAGCAGGAAATTGTTCCAGGAATATAGCATTATCAAGCCA
CTTATCCTCCGAGAATCTAATTTACAAACCGTCCTTTATCGAGAAGGATCCATAGTAGAA
GAAATATTCCTTTGTAGCCATTAGACCCGTCCAAAAGTGAGAATCACTAGGCTTTCAATA
TACTTGTGATAATGCCTTGGAACCACACATTTTCTCCTTAGGAGGGTTTGCCATAAACCA
TTTTATGTTAGTAACCTAAATAACCATTTGTCGAGTAGGGCCCTATTCTTAATCTCCAGG
TCATGAATGTCCAACCCGCCTTGGTATTTGGGATGGCAAACCACACTCCATTTAGCCAAT
CGGTATTTATTTCTCTCGCAATCTCCTTGCCAAAAAAATCTTGATCAAAAGTAATGCAAT
CTATGTTATACTCCTTTTGGCAATTGGAAGAAGCAAATCATATATAGTACCATATTACTT
AGTATTGAATTTATGATAATCAATCTTCCACTCAGAGATAGCAGTTTACCTTTTCAACAA
CTTTGTATTTTTTGTAATCTCTCCTCGACGTGTTTCCATTCAGCATTTGTGAGTCTCTGA
TAATGTATTGGTATCCCCAAATATGTGATTGGAAACTGGTCCAACCCACAGCCGAACAGG
TCAGCGTACAAGTGAGCCTCGTCTTGAGCCTCGCAAAAGCAAAACAATATGTGATTGGAA
ATTGCGATTTTCAGCAAGTGGACACCAAGGAGTTGGTCACTGTTTTTCGGTTGCACCGAA
ATCAACTTGGGATCACCGAGAAGGAAGTGTTTGGCTCTGGATGTGTCTAGGGTGAAACTC
GGTAGGGCCGATTTGGAAAAGTTGGTGGCACAGATTTTCATATTTTGTGGGAGAATTTCA
TGAGGNNNNNNNNTGGCTAACTCTAAGCACTTGAGCAATCAGATCGTCATAGATACCTCA
TCCCCTTTTAATAGTATTGATTTTCCTATGAACTCAAATATCATTTCTCACAAAATGCGA
AATGTAGAGTCTTGAAGCTTGAGGCTTGGCCAATCCTATTCTTCTCCTTCCTTGGGACTT
CTCACATTCCAGCCAGTTCTTTGTGTGGAGCTCATCTGAAATAAAATAGATAAAAATATT
TGTCCAAGAGACAATGTGTGTTGTCATGAATTATCAAAAGCTCCAAGGGAGGACATACAA
ACAAATGCGCGCGCGCACACACACACACACGAAGTATTATGCTCTCAAGAGTAGTTTCTT
TTTTTACTCCTTAAGCTTACTGAGCTTAGCGGTGGGCTTCGCGAGAACGAGCTCAATGAG
TTGAACAACTCACTTATCCACCCTTCCAGAATTACACTACTATTTTGGACAAGATTCAAC
TATAAAGTAATTTTGTATAATCTCGCACCTTCCACTAGGTGACTCCATTGAAGTTATTGT
GCTCGTATGATGGGCTATTTAGTGGCAGAGCTTGCCACTTATTATTGAGGGTACAAAGCA
GAGTTGAGGGGGGCAAAACACAAATTCTTCTTGAACTTTGATAATCTTCATTTTTTAGCT
TACCAATCAATGGAATTTCACATAATTTCTCTAGGGTAGGGAGTCCATAGCCCCACTTTG
CCCTAGTGAAGTTGCGCCACTACCCACTGTCCTCCCCCCTTTGGTTGGACAGAGGGACGG
AAGACAACATTCAAACCCCACACCATGATGCTTACACAAAATAATTTCAAAACCATAATG
GTTTAATTGTAAACAAATAACTATAATATGTGAATAATCTTTTTTCAATAACAACTAAGC
CACAAAAGAAATAATGGCATTATTTCGTCATCCTCGTCCTCTCTATTCCTAGTGTAATCC
CTCATTTCTGAATTCATTCTAGGACTAAAGAACAAAACGATAATTCTAATGTGCTAATAG
AATAATATATATGGTAATTTGATCTAAAAGGAAGATAAGTATTTTAGAATGAAGTGAGTA
TTTCATAGAAATATAACCGGTTAACAATTCCATTTCATTTCACAATATAATCGGTTAGTA
GGGTAACCTTTCGTAAGTATTAATTGATAATACTATGAATACTTTTGGAACTGTAAAAAA
ATATTATAGCTATATGCAGCCTACTCTTTGCAAATAGGCCACGCGTTTTTACTCCATAGC
CAGTCCCGAGTGCAGTGGGGGCGGTAGTAATGCTCACACACGAGGAACGTGAGGCAATCG
CCATCCACAAAATTCTCCACACAAATCTCGCAAACGCGTTTGTCGGGGTAGCTGAGCTAG
ATAGTGATTGTTGAGAGGCAAAGGAAAGATGAGGGGAAAAAGGACAAATTTGTATTAAAG
TTTGATAATCTTCAAAGAATAGCTTAGCAATTAATGACATTTCACATAATTTCTATAGGG
TAGGGGGGCTATGCCCCCCTAGCCCTACTTAAGCTCCACCACTGCCCACTCATACTCCTA
ATGTCACCTGGGCAAACGGTCTCGCGACGACATCCAAACCCCTCACCATGATGCTTGCGA
ACAAAGAATTTCAAACAAATAAATGGTTTGTGAGTAAGAAAAAGTATACTACATGAATAG
TAATATTTTTCGATAACAATCAAGTTAGGAACAAAATAATGGCATCATTTCAGCATCCTC
CTCTTCCCTCTTCCTAGTATAATCCCTCATTTGCTAATTCATTCTAGGACTAAAGAACAA
AATGATGATATAATAACTATAGTAATATTATCTAAAACGACGATATGTATTTTTGAAAGA
AGGGAGTATTTGCTAGATAATCGGTTAACAATTAGCAGATCAATAACAATATAATTTGTT
AGTTGGATAACGCCATGTATGTCTTTAGTAATAATAGAATGCGAAGTGTCGGAACCATAA
AAAAGCATTATAGCTATAAATATATGCTTATTTAGATATGTCTATATCAATCTATGTGGT
CTCTTCTTTACAAACAGGGCACGCGTCCTTCCTCCGAATACACTCACGGTGATAGTACTG
CTCACACGCGAGAAGCGTAAGGCTCTCGCCCTCCACCAACTCCATCACAAAGATCTCCCA
GACGCGTCTATCAAGATTCTCAAGCGTGCCTCGCTGCCTCGTGCCACCATTGAAAGAAGA
GGATAACGAGGAAGAGCTCACCTGCTATTCACACTAAGTCGTCCATTGACAGTGATGGAC
CTTAGTAGAGATTGTTGTGGGAGGACACAACAGAGTAGAGGGGTCAAAAGGACAAATATT
TCTTGAACTTTGGTTAGATTTAATTTTTTGTTTTACGAATTACTGACATTTCACGTAATT
TCTCTAGGGTAGGGGGAGGGCACATCCCCCTTGTCCCTAGTACACTACTTCAAGTTGTGC
ATTTTTCTTCACCCCTGCATCTAGGATGATGATCGCCCCGACAAGGTTATGGATGTGCCT
CGCAGTCACTCTAGAGCGCAGTACCCAACTCTTCAAGTGCGAAGTTGTTGGAATTATGCC
CTAGA