morexGenes - Barley RNA-seq Database

Contig contig_99735
Source Contig contig_99735
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_99735 (9755 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_99735

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_82072	1	365 bp	MLOC_82072.1	Available	Available	LOC_Os01g64970.1, FRAME:-1, EVALUE:8e-12, 13101.m07011 protein CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MLOC_82073	5	1491 bp	MLOC_82073.2	Available	Available	LOC_Os01g64970.1, FRAME:-1, EVALUE:0.0, 13101.m07011 protein CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
CDS Structure of MLOC_82072

CDS Structure of MLOC_82073

Contig Sequence (9755 bp)

>contig_99735 9755 assembly3_WGSMorex_rbca.fasta
TCGCAAATCCTGAAGTTTTCTTCGGACAAGGTTCGTTGCTTATTTGAGGGTTTTTTCGTT
TTTTTGAATTGTTTGGATGTTTTTGGCTGGTTGGCGTAGAAAACAAGGGGCTCTTTGACT
AGTAGTACGTGAGTTTTTCGACTAGTCAGAACGTTCGTTACGAGCCTGACACTATTATAT
GATTTATATATTGTTATAAATTGATGAAGATTTGAGACGACCGATAATAATCAAACCAAC
TACTCCCTTCGTGGCACAATTAAATTTATGAGTGTTTTTATAATAGATAAGATTTAAAAC
ACGTGATATTTACTCCTCATCGGTAAAAGGAAACTGGGCCAATTGCAAATCACATTGGTC
CCAACAATTTTGAATGTATGCCTTCTAAACTATGACGGAGGGAGCATTTATATTTACTCC
ATCACCCGACGTAGAGTAAAAACGCGCCCCTCTTCCATTGCCCCCACTGCACTCGCGCGT
CACATTTGCACCAACGCCACCCCTCGCAGACGCTCTGTAGGCTTCGCCGGCACTTGGATT
TGTGCCTTCCTGACCCGTCGCCGGTGCAAAACCGATGGATCTGCGACTGCAACCACCATC
GCCAGATTTGGAGGTTCCAGGCGCCGGTGGCTGCGCCTTGCGATGGATTGGCCGGGAACC
GGACCGCACGGTCCCGACAATGCCTCCGTGCCGCATGCAGGTATTGGTTTCTCCTCTAGC
CACTCGAATATCTTCCGTAGGAGATTCACCGGCAAAGACCAGCTCGGCCGTCGCATCGGG
CTCGACGCTGGCCCAGTGGCCCGTCGACTCACTATTTCTAGTCGATCATAAAGTGTGACC
ACTGCCCGTTGCAGCTGGTGCGCCAAGTTTCGACTACAGGGAACATCCCGGATGGGTGTT
CTTCAAGTACAAAAAAACGGGCTATGTGCTTGTTTTGATTTGATTGTTCACCAGATTCGG
CGCAATTTCGGTAGTTCATTGTTTGTTTTAATTTGTGTAGGAAGGATGCAAGTTTTGGTA
TTGGAAAAATGAATACATGAATTTATTGATAACAAGAAATTTGATAGATGTTCGTGCATT
TGTTGCTAGAATTGAAGCTAGAGATGAGACTAGAGATGAAACTGAAGGAGAAGCAACATC
CACTTCTTTAAAATTGAAGAAGAAAGAAGTGTGCACACTCAAGAATCCGCAGATCAACAA
TGAAGACATATAGAAGATACTAATCCAACTAGTAAGAGCAGTTATGAAAGCTGGATATTT
TTTAAAATGTCTAATTATGTTTCTTGTTTTCTTTGGTCTTGCTCTTGTAGCGAAGAATTA
GTGAATTAAGTACTCCAATGTACCAAAATGTTGTTGAATAAATAAAGTAGAAAAAAAAGT
GTTTCATTGAAATTTGTGGCCCATACACGGCTATTGTTGGGTTACTTGTGTCGTGTTAGC
CCAGAGATAGAAGTAGGCTTGGTTCTGTTATTTCTCAAGAACGTGACAGCTTAGTTAGCA
TCACAGATTGTTTTTCTTTCACACAAGATTAGAGGCCGAGTCATGCTGCGTTCACGGCGG
GCCAGCAACAGCTCGTTCATGGTCATGATCCGCTCGATGTGGGATGGCGCGTCGAGGGCG
GGCGTGGCGCATGAAGCGGGCGAGTCTGTTGCAGAAGCAATAAGAAGAAGAGAAAGCAAA
AAAGCCGTCAGTCAGTTAGGCCTATCTTCTCCCTCGTGTGTTGTAGCTGACGACGTTGAG
CGTTCGATCGTGAGCAAGAGAGAGTTGCCCAATGACAACGACAGCTATCCACGTTGAATG
CTTCCAGACACTTTCTTCGTTTTTATTTACTTCACATATTAAGTTAGTTTACAGTTAAAC
CTTATATACTTTTAATAAGTTTGTAGAAAAATACATCAGTATATACATCATCAAATTAAT
ATCATTGAATTCATCATTGTATATATTTTCACATCATGTAAATTTCTTATAGTACATGTT
TATGTTGTTTTCTATAAACTTGATTAAATTTTATAAAGTTTGACTTCAGTCAAAGCTAAT
ACGCGGAGTAAATAAAAATGGTGGGAGTAGATAGCATACCCAATAGGTTCAGTTCCTTCC
TCCTGCTTGAATAATACAATTGTTTCCCTTGCAAAAAGGAAAGAAAGATAGATAGCATAC
CCAATAGGCTCAGTTTCTTTCCAACACTGTCCACGGGAGGCCAACATGGTGGCGCACAAT
CTTGCAAGACATGATTTTGATTCGAACAATACAAGTAGCTTGGGAGGGTAATCCCCGGTC
TTTTATCTTACCGATGTAATAAACGATGAAACTCTATTGAAGTTCAAATAAAGTGCACCG
TATGGTATTCCCCACAAAAATAAGTTTGATGCACATGGAAAAACCTCTTTTACCAGCAAA
AATAACACATACTAAACGGATCGGTTGTCAAAAAAGGAAGTAAAAAAACATGAAACGGAT
TCCCTGTGCAAAACATTCTCCTTCAGAATGAATATTACACTACACACTACATTACGTTAC
AGGAAAGCCCAAACAAATCACCTCTGCAACAGAAAATCATACTACATCCTAACAAAACCA
AACAACCAAATGTCCAATTATCTACATCCTCCCAGTCCCACATCACAAGCAGCGGTCAGA
TGCGCAAGGAGCTCATATCCAGCTCCCCGCTCTCGAGAACCTCCCTAACCTTCTTGTCAC
ACTCATCTTCTTCGTCAATCTGCTCTGGTACGCTGACCCTCGCTCGGTTTTCCTCCTCAT
CCGATAACTCGTCGGCGTAGTCATAACCTGATGTGAGTGATCTTGGCATCTTCTTTGCGT
CTTGCACAATCGCCATGATTTCCTGGGTTGTTTGCTTCGAGAAAGAAGGCACGCTGCTGC
TCCTCGTGTAGTAGGCAGACTGCGCTTCATCCGTGAGCTCCCGCGGCAAGTTCTTCAAGA
ACCATGGGTGGCTCTTTATTTCTTTCATGGTGATTCTCTATGGAACATAAAAAGATGTCA
CATCAATGCGGATTCACTTATGGACACGTTGATCTTGTGATCCCCGAAAGTCGAGACCAT
TACCTTCGTTGGATTGCTCACAAAGATGAGCGAAATGAGCTGTCGGCATTCAGCAGATAT
AAGAATATTGTCTGGGATCTTATAGTCGACTGCTGCTATTCGCTGCAAACAAAGATAAGC
GACCCGCGTCATGGTTGACAGAATCAGATGGGGGGCAAAAGGTAAAATATAAGTGCTTGG
GGGGGGGGGGGCAAAAGCTAAAGAAAGTTCTCATCTAAGCCCTCACAATATTTTTTTTTC
ACAAGTTGCTTCAATTTTGGGCGGGCCACAGCCCCCCTCTACATAGCTCCGCCGTTGGTT
GTAAATTTCAGGTGGCAAAGAACTTCTGTAGCGAGGCCTCTAAAGTACATTGATGAGATT
ATGTAGGACTAGACTATCACCTGAATGGTCTTCTTAATATTCTTGGGGTCATCCGGGTCT
TCAAAAGGGTAGGCTCCCACAAGCATGACATACAGAGTCACCCCACAGGACCATACATCT
GCAAGCTGCACTACCAAAATACACTTGTCAGTATTCAATTACATGATGTACACTTCCCTT
TTATTATTCTATAAATTCGTTTTTGCTATGAACCAAGAGACCATTAAACAGTTCATCAGA
TTAATATGGCAATAGCCTCTTTCTCAATTCATAATGTTAAAGCAAAGCAATTTAAAAAGT
CAACAATGAACCGACTTTGGTCAACAAAGGTCGTATTTACAGAACAAATAAATAAGTATG
AACTCCAGCCTATCCGATTCACATCTTAAGCCTCTTTTGTGTACGAAAATCAGGTCATTG
CACTACCAATGGAGGACATTGGATAAAAATTCAAAACAGGAAAGCCACACCGCTACTTAT
CCTCTGTTCACTATTACTACTTATTCAACGATCCATTAAATTATCCAGAATTTACAAATA
GACAATTCCTTGCTTCTCTTGATACAATATTTAGTACGAAATAAACCTTCAACCAAAAAA
ATGTGTTTACATGGAACATATAATTACGATTACTCTGCAGTAGCTACTAAGAGGGTGTTC
AATCAAATAACTACTACTCCGTATATGTGAAACTATGTTCATCAATGGAATCAATAATGT
TGAAGAAGACACATGTTCTTTGCAAAGGGAATACCAATTGACCAAACTACTTTCTGCTCT
CAAACAGGGTGACAATGTCTGAATGAAGGTGGCAAAACAAGCGACAGTGGCGACTAGTTG
CCAATTTTGCTATTCCCAAAACAGCCATCGTCCATGATCCAAGCCCCTTCCTCACATTGA
TATTAATGTTGAATCGAATTCAACATCCATAATCAAGACACAAAACTGTGGGCTGTCAGA
TTCAACTTCCTACAAAAAATCAAAACCGTAAACTAAAGCACATCCTTTGCCATATCCTAT
CCTATCGCAGTCTTGTATCATTTTTTATGTAGAACTTCAGTCATCATGACCTAAAGAGTT
TGGTACAACTTCTACTGCTAAATATGGTGCTCAACCAAACAACACTTTCAGGTTTTCTTT
GCGTGGCAACTCATTCTTTTAAGTAATGCAGAATGTCTGCATCATGTATTTTTGTGCATG
TCATGGTGGAAGGAAGATAAGTAAATCTATCCATACACAATGCCAAGACGAAGAACATAA
GGGGTGTGCTCTTAGAAGATGTGCTTACAAAGTTCAGAAACATAAAAACGCACATCATAT
ATAAAGAAGGGTTTCTTTTAGGTCACCTTCCCATCATATTCCCGGCGACAAAGAACGTCC
GGTGCAATGTATGCTGGTGTACCCACTGCAGACTTGGGCCTTGAATGTAGTACCGATGAC
TGTCACAAAATGGCAAAGGGTACAATGTTTAGCAGTAAACAGCAAACAGTTATTCTTATG
CAGACTTGCAGAAACATGACAGGATTTACAGCGCGTGTACCACGACTCCTATGAGATTTG
TTGTTAACAAAGATTGTTCAGAAAAAAGAAACTATAATGAGATTCGACAACCAACCTTGG
AGTACCCAAAATCGCATATCTTGAGCCGCGGAGCTGGGCTGCCATCCAGGAGAACATTCT
CCAGCTTCAAATCCCTATGGCATATTTGCTGGCAAGCAGTAAAGTGATTGCAACATTTAG
CATATTTTCAGGTCCCACTCACATTCATTTGAAAAATCAGCGCTGGCACTTTCTTTCTAC
TCAAAGAAAGATGTGAGAACTGTAACTTGCTTGATGTCCAGCTAATACGAGAGTAATTTA
TTGCTTCTCCATACCATGTGATGGCAGTAGCTTACACCGCAGATCAGCTGCTGGAAGAAA
TATCTGGCCTGCAGCAAGCAGAGGGGGGAAAACGCTCAACAGTAAATTTCACTCTGGATT
TCGAACTTGTGCTGGGGAAAGAAGATAAAAACGAGGGCTGTAAATCGTGTGACCTCGTCC
TCGCTGAACCGCCCACGATCAACGATTCGATCAAAGAGCTCGCCACCGGCCGCGTACTCC
ATCACAATTGCAAGATGCGTGGGTGTGAGGATCACCTGTCGAAATTTCCAAGCACTCGCG
ATTGTCAGTTTGAGATAGGAAAGGAAACACCTTGGTGCCGAAGTAGTGCAGAAGAATCGA
AATTTTTGGCCGGCAGCTATCCACGCCACCGTCTCCAAACTCTAACGAACGGTATGGAAA
CACAAGACAAGACCAGACGTCACCGGAGGAAAAAATAGTTTCCGTCCAGTAGCAGTGCAG
CTAGCAGATTAAACACAAAGGGACAAGGCAGATAGAGCAGTAAACAATTTACAGCTCGCT
GCTCCCTGTCTAGAAGGGACAGTCGGAAGAGAAGGGAAGACGCGCACCTCTATGAACTGG
ATGATGTTGGGGTGCCGAAGGGAGCGGTGGTTGACGATCTCCCGGTACACATTCTCGTCA
ATCTGCGCCCCCGAAAATGAGGAGGAGAAATGATAAATAATAATCACAAGGGATTGGAAC
GCGAGCCCGAGACGAACCCCGGCCGGACCGGAGCAACACGAAACGAATCGATTAATTGTT
GAGGAGCGGGAGGAGGCCGACCCGGTGGCCGCGCTCGATGAGCTTGACGGCGACGAGCCC
GTCGTTGTCGCGGTTGCGCATCAGCCGGGCCACCCCGAAGTTTCCCGACCCGATGTCCCG
CACCTCCTCGTACTTGTCCATCCCGGCGCGGGCGGTCTCATTCAGGGCCGCGGCCGTCCC
CGTCTCCGTCGCCGTGGCAGTCGTCATCGCCGGTCGCCGCCGCGCCGGGTAGGGGAGGGG
AGGGGGGCAGCTCGACGAATCGATGGACGGGCAGGTACAGGTGGCGGTGTGGCCTGTGGG
TGGCGGGCGCGTCGCTTTCCTACCTGGCGCCCTGTGCGTCGCGTGCGCGTGCGCTCGCCG
GGTATATATAGACGGACGCGTCGTGTGCGCGTCCGGCTGCACCCAAGATTCCGCTCCGAG
CCTGCCTGTGACTGTACTGTATCCCTACCGTACCCGTATTCCTTCCAATACTTTTTATTA
CTACTCGTATTATTTATATTTATATATGCTCTCCTCCCACTTTAAACAATCATTTTCCTA
CTCCAGTTCCACACAGAAGTTTGATAAACAATATATATAGACTGGAGATGCTTCTAGGAC
ATATATGATCTGAAGTTATCCTGGTTTAGTCTTTCTTTTTTGCGCACTTGCTAACATGAC
GGAGCTACGAGCGGCGACGACCTGACCTAGCGGCCGGGTCGGACTAGTTTGGAGTGTGAC
GGGAAGAAGAAGAAGGTGGGTGGAGACTCGATGTTTGATGGGTGACAATGGACTCGTGCA
GAAGGCGACGTTGTCTGGCGTCATGGTGACGTCGATGATAAAGAGGACTGACAAGGTCTA
TGAGTTAGTATTTGATCTGAGGATGGATCGATGGATGAAATAGATAACGGTCCTCGCAGC
ATGCGCATATGGTGCCTAATGAAAGTGCATCGAACCGGTGTGCTCACTCCAGGTATCGTG
GCTTCGATGAAACATCCGACATTAGATGTTAGGTGTTGATGTGATGTCTATTTGGTATTA
GGCTCGGACCGATGTTGTTAAGATGGTAACTTCGAACTTACTGATATATTACCTTGCAAG
AACTTTGTGAATAATTAATAAATTGCTACATGCATCGTCCAGATGCAGAGGCCGATGATA
CATCCTCCTTTGCAAAGAAAAGAAAAGAAGGCACTTCTCTATTTAGAAAGGCAAATGATT
GCAATCAGCCAACCGACAGCGAGTAGAGTTTCTCAGCATGCGCAACCATTAGATACCAGT
TTGATCAAACGAATCAAATCCTTTAATCGATCAGTTAGGACCCTCATCATTGGACACGTG
CCTCTGCCAACTTGACATTTTTTTTGCAACTTCATTTGTGTTGTAGAAGTCCTTCTGCAT
CAACATTCATGTGACCAAAAAGTAATACAACATTCATGTTGCGAGAAAGTAAAGACGAGA
ATTTTCTGCGACATCACCTATGTTGCATTTTTTTGGAAACAACACTCATGTTTCAGAAAA
GTTAACAACAAAAAATTTGCTTCAAATGTTTCTGCAACAAGAGGTATGTTGCAAAGGTTC
CGCAACGCTGCCTTTGTTGCAATAATGAGGAAAGAGTCTGCCGTTAAATGGCCCTAGATT
AACAGCCGTGGAGGCGGCGGATCTTTTCTACCGATCGACGCTAGCGTCGCCCAGAAGAAA
TACCACAACTTCATAATTTTCTGAAGTATAATTATATGGTAAATGATTCCGATTAGCCGG
TTGATCTTGCACGGGGTTTCCGCCGCCTCCTTCACTCGATGCATGGCTTACAGAACCACG
CACGCCTGTCATCTTATCTTGCAACAACGGTGTTGTTGTAGAACGGTGACAACAAACGAT
AAGTGCGCGAATGGCTGGAGATGTCATTGCAATTTTTTCAACATGAATTTGTTGCAGAAA
ATTAGATAAGACGAAGATGCTACTGCAATTTGTGCAAGAAGAGTCTTGCTGCAGAAAATA
AAAAAAGTTATACAACATGAATCTTGTTGCAGAAAATTTACAATAAAGATTCTTTTGCAG
AAATAAAGTTTTGTTATAGGAAAAAATTACGATACAGAAAACCCTGCGACGGATCATAAG
GTTCACGAGGCGGCGGATTTTAAAAAAGGAACCGCCGTCCCACGCTTAGCATGTATTTCC
CTTCCTGGAGTTGAAACACAGATAATTTTTTACCCAAAAAAAGCAGGATTATTTAAAGTA
AAATATTCTCCTAGGAAAAAGAGTCCATTTTGAAGATAAAATATCATCCTCCTGTTGCCG
AACGGGCCCTTAGTCCGACGACTCTTGAACCATGGAACAGTGCAATTGTTTGTATCAAAC
CTTCAACTTTGCGGGGTATCAACTAGTAACTGTAACGCGTACGTAGCTTGTAATAAGCAT
ACAGATACATTTCCGCTAACCCGATAGCATAGAAGACAATCTTCTTTTTTGTGTTGCTTA
TGTAGTTTGCAGGAGATCTGTGTGTCTATCTGCCGAATCAATATTCTTAAAAGTTCTCCC
AGAATCTGCTTCTCACATAATCTGTTGTCAAGTTTGTAAGAGATTGCAGTTTAAGATTGT
GAATTGAGTTGTGTGTTTAAATGTCCGTACTGCGCCAAGGCAGAAACTGTTTGATGAATT
GTTAACATTTTATTGTTTCGAACAACATATTGTCGAATATGAGTACAAAAGTGATTTATG
AATATCATAAAGTGCTAAATATTACAAGTATAATGGTTTCAAAAGTTTTGTTCGTTACAA
AAGTTGATGACTTAATTTAAAACGCATAATCTCAAGAAACAAGGCTGTCAGCAATCGTAT
CACACATTGCGTTCATGATACCTTCATCTTATGATGGTAGAACGTTGGCACCTGTAAATG
GCAATGGAAGTTGCACATACACACAATGTCAAATTTGTCAAAATGCTCATCACGTAACTT
GCTATCATGAATCCAACTATGGATATATATGCACAGTGGCAAAGCTTCAGCCTGAAAGCT
GGGCGGGCTAGTATGGGCCATGTTAGGAAATTGCACACATCAATTGTTTACTAAGTTTCT
CTAATTATCCTTCCCTATTTTCGGATGGGCTTGGTGGGCCAAGGCCTAGTTTATCCCCAA
CGTAGCTCCGCCTGTGCATATGCATGCCGTGACAATCATCTTTTAGGTCTTCGGTATGTA
CCGAGGTATGCCTCCGAGTATTCATCATTTCATCACGAGAACACCAAATGCTCTTTTGAT
CACATTTTTCAAATAAGAATGAGGATGGTTGAATGTCTCATATCAGCCCACCGACGTGTG
TTGTCGAAAATCTGGTACATGGTATTGTTGCCCTTTCTGTGGTGTTAGATATCTAACCCT
GTTTGGAAATCTGGAGTCCACAACACTACTAGGGAAAACCTTACCAGTACGCTAGATTTT
ACCCCAGCGTGATGCCCTCCGTAAACCCAGGAATGACACTTCCGTATGAATTGTTCATGT
TCATGCTTAAGTACACAATGTCTAATAACACCATNNNNNNNNNNNNNATAAAGATGTGGA
TCATCCCAAAAGTGATGTCTTAAATCAAAGAAGAACTTTTTATTTTTTTGGTAGGTGAAA
CTAGGTGCCAAGGCCTAGTTTATCCCCAATGTAGCTCTGTCCCTGCATATGCATGTCGTG
ACAATCATATTTTAGGTCTTCGGTATGTACCGAGG