Contig Data
morexGenes
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Map Locations of contig_99492 (8191 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_99492

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_82028 1 1327 bp MLOC_82028.1 Available Available LOC_Os04g51166.1, FRAME:+1, EVALUE:4e-134, 13104.m05207 protein expressed protein
MLOC_82030 1 350 bp MLOC_82030.1 Available Available None
MLOC_82029 1 545 bp AK365405 Available Available None





CDS Structure of MLOC_82028






CDS Structure of MLOC_82030






CDS Structure of MLOC_82029






Contig Sequence (8191 bp)

>contig_99492 8191 assembly3_WGSMorex_rbca.fasta
AGTATCTGATCTCTAACCAACATTTGTGCAAATGGCTGAGATTTGATTTTTCATTAATAA
AAACTGTTTTGCTATTTATATTTTTAAGAATATCGATATTAATACACAACCTGGAACATT
TGGTATGNNNNTACTTACAAATTGATTGTTTTCGATGTAGCTGTCTAATATGTTTGCAAT
CAAATTAAGACTCACTTAGATTACAAATGCAAACACATATATCAGGAAGATAAAAAAAAT
GTTCTAATCCATATGCTATCATTAATTAACAAAACAAAATTACAAATGAAACTGTTAGTC
ATAGAATTTAATTAATTATAAAAAATACAAGGGCCAACCTTAATTAAATTTATAACCCAT
TGCAACGCACGGGCATTTGTACTAGTCTCTAATAACTAGACATTACTGAAAATTAACGAG
ACATTGTTGTTAAGAGATCTGTTACTACTATGCGACACTTCTAAGATAGCATCATTTTCA
AATGTCTAACCCCTTTTCTCTCTCTGCTCGCCATTGGCGTGAGAGGCACAAAGGGTAGAG
ATGCTGGGGTATTTTTTTTTTCTTGGTAAAGACGAAAATGAAAACCGGTCCATAGAGCAG
CATTCGTTGACTAAGCTTGACAGGCTGCAGATACGCGGCCCAAACAGCCTTCGATCGTCC
CAGCAGGCACACCACCCAAGCCCAAGAAAAGTACGGTCGCTATGCCCATCTCCAACCATC
GCTCACCCCCAATTCCATCCTCCTTCACCTCTCTCCACCGCCGGCGTCCGGCGACCGCCG
CTTGCCGGCCTACCGGTGATGGATCGCGCGTCCACTTGATGGATCCGTCGGCGGCAGAGC
CCGCGCCGCCACGGGCCGCCCCGGGCAAAGGGGCGGACCCAGCGGAGCGGTGCAGGCGGC
GGTGCGGGATCACAGCCCGCGGGGCCCTCGTGATGGCCCTCCCCATCGCAGCGTCATTCC
TCTTCTCCTTTCTCTTCGGCATCGCTGGCCTCCTCCTCGGCGGGCTCTCCTCCAACGCGT
CCGTCTCCATGCCCTCCACCTGCCGCATCCTCTCCACCGGTCCGCCGCTGTACCTTCCCT
CCCGATTTACTCCCATGCTGTTTCCAGAGCTTAGGAATCCAACCGGGTGCTGAAGTTAGC
ATGCAAATTAGCTGTCTTGGTGTTTAGCGTGGAGAGCTTAGTGCAAATTTTGTGATGTAA
TACAGTATATTCCATTTATGCACTTTACCATCTGCTCCACAAAGTCTAAGAACTGCTTAA
GTATTCACCACTTGGTGTGTCGCTGTGTGGATTGCGACGCGCCATCACTTGTGGTGTGTG
TTGGATGCTGATTATACTGTGGCTCAGTTAGCAAGCTTAGGATGTGATTAGTTTTCTCTT
TCGGTTTAGACCGAGCTGCGTTGATCTTTATCCTGATGCGGTTCTTGGCGTATTGTAGGC
TTGGACATTCGGTCATCTAAAGTTTGCGAGCTTGGACTGTTGAACTATAAAGCTAAGCAT
GTGTTTTACCCCTCGAGCAATCGAAGATTCCGCTGCCATGATGACTATTACTGGGCTTCA
GTTTTTGAGGTGAGAATTTATATTGTGATTCTACATTGGTGTTTGTTTCTCTAGTGGAGC
AGCTATAAATGTTGTTAAAGCTGCCGGTTGGTTGTTTCACTTGCTTTATCTTCTTGTACC
AGCACAGCGACATTTTATAAATCTTGTATTAACTACTTTTTAGCTATTCTCACATTTAGC
TCCTCTAGATTTGGCCTGTCTAGTGCTTTTAACTGATAATATTATACACGGACCTTTGAT
GCTTTCTATGTGCTCTCAACTCCCAAATAAGGCAATAAATGATGAACAATTCTAGCTGTA
GTTTTTAGTTTGTTTATAAAGGACCTGTTAAAAAAGATACGACATACTTATATCTGGAAC
ATCAGCTTGCGGTCGTGCACGTCTTTCCGCTTACTATTAGTATTCATGAGGATTACTATA
TTTGTTTAGTTAATTAATGGGTGGGGATATAGGTATCCAGAATTTAGGAGGGGGAAGGCC
ATGTGGTGTGCAAAACAAAATTACATAAGAAGATCATGATACTGAAATGCACAGTCTCTC
ATTTCTTTTCCAAGTTAGTTTCACTTGCTGAAGTAGGTTAACACCTTCCAAATTTACCAT
ATCAAATAAAGAAGATCATGCACATATTCGATCCCCACATACCTCATAAGAAAATGACTT
GTCAGCAGCAAACCATCGTTTTAGGTAGCTAATTTATAAAGAAAACAGCAGGTATTAACT
CAACAAATCAAAGGATCACCTGATAGGTCGGACAAGTACTTCTATTGAGTATTGACTGCA
AAATACTGCTCAAAGCTAACTCAACATAGCAACAAATGCGGGTATCGGAGGCTTACTTGA
ATGCCTAAGAGACTCGGGAGGCTGATACTCTTTGTTTTAAGCCTAACAGAAGCAAATGAG
CAAACACCTAGCAACAAATGCGGGTATCACAAAATATACTTCTCAGCATGCTAGCAAAAT
TGACGGGCAGAACCTAACGGAAGCAAATGAGCAAACACCTAAAGTTACTCAGACGAGCAA
TCAGCATCTTATTGAGCAAGTTGGGGTTCTTGAAGAGAAAACGGGATTACAGAAGAGCCT
TACAAGTGTATTCATTGGATCTTGTGGATCTGCGACGGCATCACCATGTGTGCCGCAGCC
TATGCCGGTCTTGCCTTCGCCTCAACGTGCATGACAGTTGTGAGCTCAACGGTACTGCCA
TCTCTCCTATCGCTCCCGTGTGGGACCCATGTAGAGGGCGTGCTGTTAGTGCCGGTCACA
CTGATGTTGGGATACCATGTCGTGGATAGGACAGGTTGCACGCGATGCCTGCGTTTGGGT
CAGTGTCGTTGTGCTCGACACCACTGTTCTCCGCCAGGAACAGCTTCTCCGTTGGCGGGT
TCGCCGTTGCGTTCTCCGTTGGGGGCGGCTCCTCCTACACCGGTGACCCCAAGTCCCCAA
CCGCGACAGCAAGGGGAGGCACAATGCTGCGACGGAGACGAGCAGCGGACGGCTCGTCGT
GGCAGAGAATGTGAGCCGTGGTGGCGGGGCGGGGCGGCTATTTTTCTCAGTGGAGAGATG
GAAGTGGGGGTGAGGGGCGGTGGAGGAGATGAGGCGTGCCTGCGTGGGATGCGTGGATGA
CGGACGGGCGGTCGTTACCCTTTTCCCTGGTTTTTTGTTCTTTTTGTTTTTCGTGCAGTG
GAAGGGGAGGGAAGGAGGAGTAACCATTACGACGGCAAACTCACCTTTAATAGTACAGAT
TAGTATCCTCACATTCATCTCCTCTAGATTTGGGCTGTCTAATGCTTTTACTGATAATGA
TATATACAAATCCTCGAAGCTTTCTACATGCTCTCAACTCCCAAGTAAGGCAATAAATGA
TGGACATTTCTACCTGTAGTTTCTAGTTTGTTCATAAAATCCTGTAAATAAAGACACAAC
CGATTTAAATTTCGAACATCAGCTTGCGGCCGTGCACTGCACACTGCACAGCCTGCCCGC
AGTCTTTCAGTTTACTATTAGTATCACAAGGATTGCTATATGTGTTTAGTTAGTTAGTTT
TTCTCACTTGTGTTGCGGATGAATACTGTAGGTTGAATACACAGAATATTTTTCTGGTCA
AACATCTTATGCAATGGCAGAAGCTCCAAAAGAGGCTCTTCCTCACAATTGCCGGCCTGA
TTTTGGTGCTGTATGGTCAACAACAGCAAGGTTCAAGGTACACTACTATGGAACATCTAG
TTCACATGAGAAATACATAATGTTCTCTCCAGTGGTTTTTTCAATCTTCAGTTGTTTGCA
TGCCCTTGGCGTATATGATGTTTAGTTATCAAGAGGTCATCATTTTATTATCGTCTTTTC
TTGTAGGTCAATGAATCATACAAGTGCAGATACACACTGGGGAGTACCAAAGCTGACATC
TATTCAGACAAGCTATTCAATTGCACTGCTGAGGAGCCTTCAATAATTGAAATGCTGAAA
AGGATTTTTGTACTGTGAGTATATATGCCCTCTAATTTTCTACCTACTGCATGGGCATCA
CCTTACTTTTTTCATAATGTGATAACATCATGTTAGTCCACATATCCTTCACCAGAAGTC
AATAGCCAAAAATACTCACTGCTCTTATTTTGCTCTGGTGATCTGACTAACTCTAGTGCT
TTTATCCTTATCAATTGGCTTTGTTTCTTATACTTGGGTTGTATTGTTGCATCACCACTT
TATTTCAAGCTGTAAACAGTAGGAACTTCAGAATCTTTGATTGGTTAACATGGTCTCTTT
TTCCCCTTCAGTTCTCAAATGGTCATTTATCTTTAACATTTCCATTTCCTCCCGTTTAAC
TCGAGATTGAAACACGACAGGTTCTCAAAGTTCTGCAAGTCAAAAGATTTCAGTTCGGGC
CGGATGCTTGGATACGCGGCAACAGGGGTTGTGGCTGGCGTGCTGAGCTCCATACTCATC
ACCATAGCGGTAAGAATCCTCCGAGGAGCGTTCCTCGCCGCCGCCAGGTGGGCCGTGAGC
AACCATAGCATGAGGGTGTTTGCTTACCGCTTCAAGCGGGCGTGCCTTCTTGTTGCGTAT
GTGTCTTTCGTAGGCTGGATCACCTTGCAGTACAGCAAAATGGTCGGGCTGAAAGAGCTT
GTGCTGGACCTCAAACTCATGGAGAGGTTCTTGTAAAATGTGTGAATGGTTTCGGCAATG
TATATCAAATAATAAGCCGATTCCCTTGTGTGATGTAGTAATTTATCCTGCTGTGCGCTG
ATAGGTGGATGAATCATGGGTAGGTACAGTGGGCATGGATCTGTTGTAACCTGCAGTGCA
ACATGTATCGCAATCATGGTAATGATAGTTGGGGGGCTTGGAAATGTGGTCTAACTCGCT
GGCCCTGAATGCAAAATGAATCAAAGAGGCCCCAGCGAGGATAGTTATGAACATTCTTCA
AATAGATTTTTTTATTTCCAAGCCCCCCATTGTCCACTGAGCCTTCTCTAAGCTGCTTGG
AGTTGAGAAATTTCCTCTGGAACGCAGTACTTACAGAAGTCCCTGAAACTTTTTTTTAAC
AGAATGTAGCTCTTATGATGATACGTTTTATACTAGGAAGAAAAAATGGCGGTGCATAAA
AACTGTCTGTTGCCATCGCATGGTTGTTTCCTCGAAGGAAAAGGAAAAATGGAGGCGTGT
GCGTTTCTAGAACCCTTTAGACATGGACAGGGACGGCCATCTCCAGCTGACCAAGTGTAG
AGAGAAAACAGATTGTAGTATTTGATTTCCATGTCTCCAACCACTCCATTCCTGCGCGTG
CACGGGCGGGGGTCCATGGAATCTGTCGTTCGTCCCCATCATCCCGGCCACGGCGAAGAA
CGGTCAAGTCGCCTCCTCGGTAAGAACGGCCACGGCGAAGAACGGCGAAGAACGGCCACG
GCGAAGAACGGTTCGTCGAACCCGGAAGCCGGCGACGACGTTCCCCGTCACGAGCTCCTC
GGCCAGTCCGTTAACAACTCTTTTTCTTTCTTTTTGGAAGCCAGACAACCAGACAGACAC
TTGCACGGCAAGCAGTTGATGCCGATTGGATTAGGCAACGGCTCTGCCCAGGAAGCAGCG
CGGCTCCGCCTCACTGCTGCATAATTGTGTAGTACTGTACGTAGGTAGGTACAACTGTCT
CAGGTTAAATATGTATATGTCCACCTTTCTGAATTAAGTACTCTGTTAGCAGCCCCTCAT
GCACATAAACAGTATGTATAACAACTTAATTAATCTTCATTATCCAAACAACCACAAAGT
AAGGACCCCGCAAAAAGAAGGTAAGGATAAAATGAAAAAAGGGTCTCCATTGGATCATCA
TCGATCGCAGGGAGAGTGCGCACATGCTGTCCAGTGACGTTCCGGGAAGGAACCACCGTG
CCGTGCCGGCCGAGAAGTTCCCCACACGCGACCACCCTATAAAACCATCTCCAGCAAGAC
GGTTCTTGCCATCGCTCAGTTTACCAGATCAACACCAACAGAGATCGCTTCCCACCCACC
AAGACCTCCCATTAGCTTTTCGACCAGTTTATTACTTCTTCAACAGCCAAGAACCATGAG
CTCTCGGATGGCCGGAGCCACGCTTCTGCGCCACCTGGGCCCCCGCCTCTTCGCCGCCGC
CGAGCCGGCCTCCGGGCTCGCCGCGAGCGCAAGGGGCGTCATGCCCGCCGCCACGAGGAT
CTTCCCGGCGCGGATGGCCAGCACGGCCGCCGCCCCGCATGCCAAACAAGAAGAAGCCAC
TGAGAAGCCCCAGGGCGCGACGACGCCGGAGCAGGCGGTGAGCTACTGGGGCATCGAGCC
GCGGAAGCTCGTCAAGGACGACGGCACGGAGTGGCCGTGGTTCTGCTTCAGGCCGTGGGA
CACGTACCGGCCGGACACGTCCATCGACGTGGCCAAGCACCACGAGCCCAGGGCGCTGCC
GGACAAGGTGGCGTACCTCATCGTGCGGACGCTGCGCGCGGGCAGTGACCTCTTCTTCCA
GCGCCGGCACGCCAGCCACGCGCTGCTGCTGGAGACGGTGGCGGCCGTGCCGCCCATGGT
CGGCGGCGTGCTGCTGCACCTGCGCTCGCTCCGCCGCTTCGAGCACAGCGGCGGCTGGAT
CCGCGCGCTCATGGAGGAGGCCGAGAACGAGCGCATGCACCTCATGACCTTCATGGAGGT
GACGCAGCCGCGGTGGTGGGAGCGCGCTCTCGTGCTCGCCGCGCAGGGCGTCTTCTTCAA
CGCATACTTCGTCGGGTACCTCATCTCCCCCAAGTTCGCGCACCGCTTCGTCGGCTACCT
CGAGGAGGAGGCCGTGGAGTCATACACCGAGTATCTCAAGGACCTCGAGGCCGGCTTGAT
CGAGAACACGCCGGCCCCGGCCATCGCCATCGACTACTGGCGCCTCCCCGCCGACGCCAG
GCTCAAGGACGTGGTCACCGCCGTGCGCGCCGACGAGGCGCATCACCGCGACGCCAACCA
CTACGCATCCGACATCCATTACCAGGGAATGACGCTGAATCAGACGCCTGCGCCGCTCGG
GTACCACTAATAATCAGTTCAATGAACCATAGATCGATATGGCTTCTCAGTCCACGCTGT
TACGTGCTACCGCTGCCGCCGATGTTCGTCCCGTTAATTTGGATGGATTGTTGCGTGCGC
AGTATGTTTATGTAAACGGTTTATGTCTGATGAGTTCTGTTTGTCACTTTGTACCCAAAG
ATATGTTTTTGTAAGCCCGTAATTCTTGTAAGGACAACGCTACCCAGCGGCGCCGCACTT
GCGTCCTGCGGTGTGCGGTGCGGCGGCCGAACTAATCATCATTCTAATAAAAAGTAACGT
TGTTTTAATGCTTTACTAATCATGTTACTTTAAAAAAAGCAATGTGATGCTGCGGTCAAA
CCCTCTCCCTACGTCAGTCAGTTATGCATGTATGCAATGATGTCATCAGATTTTTTCAAA
GTGATTGAAATTCAAAAAGTTTTATCTTTCAAACCATTAATTCGATCGATGATCCGTTTT
TGTCATGGACTTTGTTTCGATGAAATTTTTAAAACTAGATCCCATGTCGATATGTTTCGA
CAACTTTTTTGTTTCTCGTACTTACCACATTTGTTGTACGTACTTGTCATATTAGTAAAT
ACTTACTTGTCTGATAAAAGTTAACTTAATCGCCATATTTTTTAGAAATTGCGTATAAAT
ATGACATCTCGACATAATCGAACGAGCAAGCACAAAACGACATTTTTAGGACGATAACGT
GTAAAAATATGACAACTCAGTACATTTAAAATCGACGACTAGAAGAAATCTTTTTTTTTG
GTAATTGTTAGTAAATATGACAAGTCGGCATAGCACAAAATATTTTTCTAGTAAAGTTGT
ATGTAAATATGATAAGTTGACATATTTAAATTGGCAAACCAAACCTATGTCATGCGTTTA
TATCATGTATAATGAAAATTGCTACAAGACAACAATAATTTGTCAAACACGGTCGTCGGG
TTTAAACAAGCGTAGCTGACAAAAATTTATACACACAGTTGCCAAGTTGACAACTAGGTT
AATTAAATGTGGCTACTAAGTGTCTCATAATCTAACAACTAAGTAATAGTAATCTGACAA
CTATCGATAAAAAAAAAGTTGTCGAAACATG