| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
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Predicted Genes from contig_99006
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_81929 |
1 |
562 bp |
MLOC_81929.1 |
Available |
Available |
LOC_Os02g26510.1, FRAME:-2, EVALUE:1e-43, 13102.m02870 protein retrotransposon protein, putative, unclassified |
| MLOC_81927 |
1 |
906 bp |
None |
Available |
Available |
LOC_Os04g28820.1, FRAME:-3, EVALUE:2e-158, 13104.m02732 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_81926 |
1 |
243 bp |
None |
Available |
Available |
None |
| MLOC_81930 |
1 |
207 bp |
MLOC_81930.1 |
Available |
Available |
None |
| MLOC_81928 |
1 |
461 bp |
MLOC_81928.1 |
Available |
Available |
LOC_Os02g26510.1, FRAME:-2, EVALUE:8e-40, 13102.m02870 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_81929
CDS Structure of MLOC_81927
CDS Structure of MLOC_81926
CDS Structure of MLOC_81930
CDS Structure of MLOC_81928
Contig Sequence (3756 bp)
>contig_99006 3756 assembly3_WGSMorex_rbca.fasta
GGTGTCACCCACCGTGCGTCTCTGTATTGCTTAATCTCATCGATTTCGACGTCGTCTGCT
TTGTCAGTTACAGATACAGATGCTCGATCATGACCCTTGTAGATGTACTTGAAGAGGTAC
TTAACGACTTTAATGCTTGAGCATATCTCAACATTTATGTGGCAGTTGAACATCTTAAAC
AGATATGAATTGTAAGGAACCACCCACCTGTTATCTAATTTGCAATTTTGGACCGTTTCA
GTCCGACCGTCATCGCGTCTCCTATATATTGGGTAGGAGTCCTTGCCTTGAATCGTAGTT
TCGTTAAATGTCCTTGGATAATTGTTCTTGCATGATGGGCGATTCTTTGTGCATGGACAA
AGTCTATTCAATGCACCACAAGGACCATGCATCATATGTTTGATAACCATTCTGTATAGA
TTTGGGTACTTGTGCTTGTTAGGGAGTTCCGCAGAGATGATTTTGTCATATTGCTGTGGA
CATGTGTACTTGTATTTTCCGATCATGATTAGCAGAAAGTGAGCATGGGGTAATCCCCTC
TTTTGGAATTCTACGACATACGTATATGCTTGAACCTTTCCAAGAATGGCCTTCTCAAAT
AGTTGATTCTTCATTTCTTGTAGCTTGGCCCTGAAAACGCGAACGGCAATGTCTGGGCGA
TCTTGTGGTGTTTGTCCAGTTTCTAGTTCACCTGTGATTTCTTCCCAGTTGGGGTTGCAG
GTCATTGTTAGGAATACATCTGGCTTTCCATATTTTCTAACNAAAGCCATAGCATCAAGA
TACCGACGAAGTTTATCTCGTGGCCCACCAATAAATGATGATGCAAGTATTCTCGTTTTT
CCGACTGCATCTCCATTCTGTTCTCCAGCTTGAATGTTGTCTAGAAGGCCTTGGTATAGG
TCCGCCCTTATTTTCTTTTCATTATGCCAAATTAAATCTAGTCTGGAGCTTCCAATCTTG
ATGTATGTATCTATAACAAACTGCTGGAAAAGTCGTCCGCCATGCAAAATTAGGTTGAAT
ATACTTGGTCGTGCATGGAATTTATAGCAGTAGTATTCTCTCATGGTTACCCACAGGCCA
CTGGCTGAATCTGTGCAAATATTGCAACATAATAAGTTAGTTACATACATAGTCATATAT
AAAAATTGAATATTGGATATAATAGTATATGATCTTTTTTACCTGTGTCATCGTCATTAC
TGATATGATCATCACCAATATCTACCTCTCGTGTTTCCCTCTTTGGTATTTTCCTATGCC
AGCCGAGCTGAGCTCTTGAAAAGAATAAAGGATATGACAATGGATCATAGCACCCATAAT
ATGATCGAATGTGCTCTTTTTCGTTGTTGTTCCCATGTAATATTACATTTCTGTCATAAG
TATCTCTTCTTTCATTTCCTTCAATCCACACTGCAGCTACCTCTGAATTAATTGGTTTGT
TATATGTTCTTTGGTCCAATCTATGGTCAAGGTTCAAAATGATTCTGTAGTCCTCAAGGT
TTTGGGCTTTCCCTAAACTCCTCAACTATTCAGAGTACGGGTTACTGCGTAGGATGTCTA
TTATTATTCCAATCACATCCTTTTCTTGCTCGTACATTTCCTCACGGCAAGAACAGTATC
AATGCTCCAAGTTTGGATCATCATCATAGAAGTATAACTGCAAATGCTTTGGATGTGAGT
CATTATTATCGAATGAGTATATGTTATGATATATTTGACCATGTGCTCGAAAGGTGTAAA
TACCAGCTATTCGCATGTCAGTTGTTTCTCTGTCGAGGTGGCAGTATAGGGTAGTAAATG
AGAAATGCCCATTGAAAAATCTTATATTTTACCGAAAATGTCTTGCATCAGAGTCATTAC
TTGTCCAAAGTCTCATGAGTTTCTGGATTGGATAGTCTTATATGTCCTTTTCTGCAGCAT
AATCCTTCAGTTTCATACTTGAGTTTGGTTGCATGGCAGAATCTGCAATCTTCTTTTTGG
AGCATGTTTGTGCTTCTCGGTATGTTGTTGTAGACGAAATCATATGGATCAGGGTTGAGG
GCCTCGTCTTCGATGATTTCAATTTCCACTTCTTTGTCCAACTCTGGTTTTATATGCAAC
AAATTAAATTTAGTAAGTAGTATTATATAATGGGAAAATTTATTTTAATTGTGTTAAGCA
TACCTTCACCGGTGAACACGTATTCATCTTCGTCGTTGTCTTCTTCAAATATGAATCCAT
CATTACCTGTGTTCTAATTTTTTATTTTGAGTGTGTGTGTGTGTGTATATATAGAGAGAG
AGAGATTTGTTTTATTGTGTAATAACATATATGAAATTGATAACCTTACTGTGATCCTCG
TTGTATTTTTTTGTTGCCGCATCTATTTCCTTAACAGTCTCTTCTTTCTCATATATGATT
CCATCATTATTTGTGCAACTGTTTTTTATTGTTATATATAAAAAATGTTTGTATAAAAAT
ATATTTATATGTGATACATATAAACTTACCGTGATCATCATTGCATAATGATTGTATTCG
TGCATGCACTTTTTGGATTGTTGGAAGCATTGTGGATGGGATGACTTCCCACAAAGCCAC
TTTATTGTGATCATCATTGTATAATAATTCTGTTGGTCTATCTGTTTCCCTTATGCTTGG
AAACATTGAGGAGGGAATGTCTGTCCAGAATAGATTGATAGTTGTACAGAAATATTTATA
TTTAAGTGTTATGCGAGTATAAAATCGAGATTCTTACCGTAAGTCATGACTTGTGGCTGC
TCTAATGGTTGATTGTTTTAGTCGCAGGTTTCCGTCATGGATGTATATTATTTTGATGAT
TCGGCAACAGTTTGCTTCCGCCTTCTTGTGAATTCTTCATTACGTTGGTGTATCAATGTT
TGCCTTTTTTCCTCCTGCGACACGATTCCTGTGTTTTATAGTTAATTTGGAGCTTCTAAC
TTCCTCTTCGGTTGCGACATATTCAGGGTTCTCCATTGCAATTGAATCCTTGGATGGTGT
GTTGTGTTTCAATTGACGACGAACTTCAATTTGTTCTATTATTGCTTTCTTCTGTTCTGG
TTGCATGTTTTCGTATTTCTGTTTTTCTTGTGCGTGTTGTGTCGCCTTCTGTTCTGGTGT
CTTTTCTGAATATTTCTTTTGATGATAGGCTTCGCGGTGTTTTTTCAGTTTGTCATGCCT
TTCTTCCTCGGTCATCCGTTCATTCCGCTCTTTATTTTTCCTTTTTTTGTTCCTTTGACT
CCTGCCTTTCTTCATTTGTCATCCGTGCAAACCGATCTCTATCTCTCTTTCTTTTTTGTT
CTTTGGCTGAATCCAGTTGCTCCAAATAAGTTTCCTGTATGAGAGTTTGTATAATGTAAG
AATTTCAAATTAATGATATAACAGATTTAATCTGTACAAGGCAGTATCATATTTTTAACA
TAGCATCATGAAAAAAATAAAATTTAATAAAACACTCATCCATATAGGTTTAAAGTGCCA
GTCTGGTTTTATGAGAATTTGTACGAACTATCTAGGACCTCAGGTTCACATGGGAATTCT
TATTTACCTACGAACTACAGATGACACCGAATAGATCGATTAGTGCTATCTCCAGATTTC
TATCATCATGTTACGTCATTTATCTTTTTATAAGTTTTACTAGGAGATGCATGTTGGAAA
TATGCCCTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATGATAATCGT
TTATTATCTCGGAAACACAATACTTGTCTGGATACA
