morexGenes - Barley RNA-seq Database

Contig contig_98608
Source Contig contig_98608
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_98608 (8722 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_98608

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_81864	4	5425 bp	MLOC_81864.2	Available	Available	LOC_Os03g49730.2, FRAME:+1, EVALUE:0.0, 13103.m05405 protein zinc finger protein, putative, expressed
MLOC_81865	2	6519 bp	MLOC_81865.2	Available	Available	LOC_Os03g49720.1, FRAME:-3, EVALUE:6e-60, 13103.m05403 protein PAP fibrillin family domain containing protein, expressed
CDS Structure of MLOC_81864

CDS Structure of MLOC_81865

Contig Sequence (8722 bp)

>contig_98608 8722 assembly3_WGSMorex_rbca.fasta
GCGGCCTCGCCGTCGCCTCCGTTCCAGGGAAGGGCCGCGGCCTCGTCGCCGCCCGCAGCT
TCTTCCCCGGTAACCCCGCCCTCCCTTCCCTCCCTCCCTCATCCGCAGCGTTTCTTTGCC
CTCCATACGCCGACCTGCACGCGAACCGCTCGACGAAATGCCCAGATGGATGGCACGCGT
GGATGTTGCTGGGATGGACGATGCTAGTCCTCTAGTCGAGCTTAGCCCGCTGGTGTATGT
AGAATCGAGCTAATGCGGTGGGATTCCGCGGCGGTTTCGCAGGGGAGGTCATTATTTGCC
AGGAACCCTACGCTTCTACGCCCAACAGGATCTCGGTTGGATCGAGCTGCGACCACTGCT
TCGCCTCCGGCAACCTGAGGAAGTGCTCGGTTTGTCGAGTAGCTTGGTACTGCGGGAGCG
CGTGCCAGGTTCGGACTCTGCCCTCCGGTTGTTTCACGCCGCTGATGGGCAAATACATGC
TTCTGTCTCGCCACACGTAAACATTCTTTCTACTGATTGTTATGCTTCCAGTGATGTCAC
TTCTTTCAGTGAAATCTTGTTACACAGAAAGAAGAATGGAAGCTGCATCAACTTGAGTGT
CAAGCCATCTCAGCGCTCACAGAGGAAAGGAAGAAGATGCTTACTCCTACAATCCGTTTG
ATGGTGCAACTTATACTAAGAAGAAAACTGCAAAGCGAAAAGGTATTGGCTGACCCCTCA
AAAAAAGAAGGTATTGGCTGGTTTGGCCTATTCCTGCCAAAAACTTTCTGTACAATACCT
ATGTATTTTCAGTGCATCAGTGTTGGCCGCATCCTGTTAGCTTGATACTACTTGTATTTC
CAGGCCATTGCATCTTCAGCAACAGATAACTACAATCTAGTGGATGCGTTGGAGTCCCGT
ATCCTGCTCTCTTGATACACTGATTCATGTACCCGCAAAAAAAAAGATACATTGATTCAT
GATAAATATAAAGATTATGCTTTGAGGGTGTTGGATTGACTTCGTATGAATAGACATCTC
GAAGGTTGATGATAATCAGTTGGTCCTCTATGCTCAAATGGCCAATCTTGTGCAGCTGAT
TCTCCCTTCAATTGAACTTGATCTTAAGGAAATTGCACATACTTTTTCTAAGGTAATGCT
CAATTGCCTGTAATATGTTCTGTCCTTGCTATTAACATGTAGTCTGGACCATTCCGACGA
AGAGTATACTTTGATAGCATAGCACTAAGTTGAAGTGTGTGTCGGCCTAGACCATTGCCA
TGATGAGATCGAGTGAATGCTTGGACGGCAGCTATGCCTCATAAGGCATGGGCTCCGCCT
TTCATTTTCGCATTTCTGGGTTTCTGACTCTTCTTTATCATAGGAGCACTGAGGAGCTTC
TTCCCCTTAAATTATTTAATTCTGTTTTAGAGCATGGCCATTTTTTGTAATTTTAGTCCT
TTGTGTATACACAACTTGGCATTGCTTATTGTCATGTGCTTGAGATATTAGCTGTAATAT
GAGAGGTTGGAAGCCTTACCCAGCCCCCTGGCTTGGTGGTGCCGTGACAGCAGTGCACCC
GACCGAAGTACAGGTGTGCAGCTGTGGGAAGGACCTGGTGCGGCGACGAATCTCCCTTTT
CTGTTAGTTTTTGCTTGAGAATAAAACTGTGCCCAAGTCCTTTTTAAGGCTAGCCTTAGC
AAAGCGATATAATCAAATCTTAGTTTAACAAATGTAACTGGAAGTATACTAACTTGGAAG
GAAGCAAATAAAAGATAGCTATATGCTGGCTTGCAACATCCACCTGGCTTTCCCTTCACT
GGCAGTTATGTTTCCTGTCCCTACCGGCAGTAACTGATCAACTTACTGTAGGAGCTCTAG
CCCTTGTCGCGCCGGTGGTAGTGGTAGCACCACATGACACCTTATGATACGTAAATTATT
TATGAAATAAGTGTGAATGGTTTATTGTCTTCTACATGTGTGCAGTTTGCCTGCAATGCT
CATACCATATGTGATCCTGAATTGAGGCCCCTTGGGACTGGACTGTTTCCTGCTATATCA
ATTATTAACCACAGGTAGTGTACTGAGCTTTTGTTACCTGTTTAGCATTTATCTCAGATT
CGAACATTTGATAAATCATTGTACTTGTATTTACCCTTTTTCTGGTATAAAGTTGTGTAC
CGAATGCAGTTTTGCTATTTGAGGGTCGGACTGCATATGTGCGCGCATTGCAACCCTTGA
GTAGCAATACTGAGGTAAGGAATGTATTTTTTTTGTCTTCTGCCTTGGTCACTCGTTCAT
TAACATGCATGCTATCCTTCCTTTTCTTTACATTTCCTCTCATTCTGGAGAATGTTGGAT
GCATATGCTTTGTCAGGTATCAATAAGTTACATCGAAACTGCAGCAACCACTTTGAAGAG
ACACAATGATCTCAAGCAGTACTTCTTCACCTGCACATGTCCCCGATGTATTAAGGTTTT
CCATTCTGGTTCCTCGCTTTTTTATTTTCCCCAGGAAATTAACATTTGACGGGGGCATAT
AGTATGCACTAGCACCTTTGAGGTTCTACTAGTGCTGTAGTGCACTAGGCCACCAATAAA
CACATTTATAACATGTGAAAAATACGGGAAAAAAATCATGACATATATATGATATATATG
TACCTTGCTACAAAATTTCAAGTCAGAGTTCTGTTACATTTCCGTCAATGTTACAGGATT
CTGAGGAAGATGATCTCCTGGAGGGATACAGATGCAAGGACCAAAAGTGTGATGGCTTTC
TGCTGCCTGACTCGGGTTGGTTGGAAATGATAGGAAAATAATAAATGAAGAGATGGAACA
AAAAGACAGTAAATCATATTTCACAATTGTTCTTGATCTTATATTCTGTCTCTATTCAAC
ATCTCTAGGAAAGAAGGCTTATACATGCCAGAAATGTAGCATTTCTAGAGATGAAGAGGA
GGTAAAGAAGGTGTCAAGTGAAATATTACTGTTGTCTGACAAAGCTTCTTCGCTTCTTTC
ATCTGGAAGTATCCTTCACTATTTTTTTTCTGAAACAAACATATCTAATAAGTGTGTGTC
TTGTATCTCACTCAATTTGCTACCTTAATAAGCGATACAGATAATAGTGAAGCAGGTTCA
GTGTACAAGATCATTGAGCAACTAGAACAGAAGCATTACCATTCTTTCTCGATCACTTTG
CTTCACACACGTGAAACACTCCTGAAGGTATATTTCTAGCTTGTGTAGCAAAAAGAACTA
TTTAGGGATGCAACACACATTTACTGGAATGACTGTATGAGTAACTACGGCCACTACCGC
CACTCACCATGCATCCTCGCTAGATCTGCTACCTCACCAGGCATACCATTGCTGCAGATA
TATATGGAGTTGCAAGATTGGCAGACTGCATTGATGTATTGCAGATTGACTATTCCAGTT
TATGAAAGTAAGGCAACCTTGATCCTACTGTATTTAACTGGGAACATCTTATGCTATACA
ATTATATAATACGGTATATATTTTACACCATCATGGTTCTGAGTTAAGAGGTTTGAATTC
TACCAAATCATATTCTGACGTCTGAGGTTAACTTCAGGAAAAAGTTCGCATATTTGTAAG
AAAATTCTCTCAATCTCATGCCAGGAAGTGCTTTCCATCTGTTCTCCCGATCTTGTTTTT
TAGGGTTCTCTTTTTTTGGTCTTAAAAGTTTGATAGGCAGCAACCTGTGGGTTTAACAAA
AAAAAGAAAGATAGAGTGAGGAGTGAACTTAGGATGGTCTGTTTTTGTCTCGTGAAGAAA
CGATTCATAGGTTGAAACCTGTTATTGTGCTTCATTCCATTGAAACCCCAAAACAACGCT
TATTGATAGCACTTGCTAAAGAACACATGATTTTACACTCACGATAGACGTGTGTTTGGG
ATCAAGCGTGAACATGTGAGTTACGACATTGGTTAATTGTTTAGTTTTGAGATAAAATAT
CATCTCGAATAATGATTGAGAAAGTTATCAGTGAACAAAAAGTGAGAACCATGCAGTGAT
CATGACCAGTACAATAAGTATATACAATGCTGCAACTGCTGCTGCATGACAACGTTGATG
TTTTTTGGCCACAATCCACAGGTCGCATAGTAGCTGGTAGAACATTATATCAGCAAGGAA
GGCCAAGGGAAAAAGTTTATATATGATCTTAACAGTTTGAAAGGACACTTGCAAGTGATA
CAATACAAACTGCTGTCTGTTTTCATTGAAAAGAATGTTTTCTCAATTTTTCATTGCTCT
TCCTTATGTTAGCTCACTGTTTATGGCAAAACTCGAGGTTCGCTAATGTTGTTGAACTTT
CATCAGGAGTTTACCCACCTTTTCATCCAATGGTCGGACTGCAATTCTATACTTGCGGAA
AGCTCGAATGGTAAGGGTACTTTTACCTATCCACACACTTCCGTTCATGTGTCATCTATG
ATGTGATAGCTTTCCCTGCCAGTATATGCCCTGTCTATTAATCATTTGGCACTGTTATGA
TATGGACATGCCTTTTCAGCAACCGTAGCACATTTTGACACGAGGTTTTAAGTTGTGATG
GCCTTTCATATACTGTAGTAATTAAAATTCGCAAGTACCCCTATGTTTGTCTTTTGCCTA
ACACTGGCTCTCTATTTTCTTCTTTCCTGACTGTTCCTTCTTTGCACCGCTGAACAGTGC
TAACTAAAAGCTCCTCCATGCCATAGGTTGCTTGAGTACACGGAGGACGCTCTGAAATTG
TTAACTAGGGCAGCAGATGTACTTCGGATAACACACGGCACACAATCCCAGTTCATGAAA
GAGCTATTTGGTAAGCTGGAGGAAGCGAGGGCTGAAGTTTCATTTCGGCTGTCGTCTGGA
GAGGAGCAAATTTCATGAGAAGGCACAACTCACCGCGATGGCAGATATGGATCGTCAATC
TCAGGACAGCGGTATAGGGTACTACTAAGGATAGCCCATTAGCACCCTGCAGACGATGCC
TGAAGATGATACAAAGTATACCGTGGTAACAATGAGATTGAAATCCAATCTTTCGTAGAG
GGAGGGTGATGGGGACAAGGGTGGTTAAACGGATCGCATAAACACGCTCTACAAACCGCA
TGCCTTTGTCTGATGTAACATGGATAAGGTGTTGAGTTTAATGATGTAGCATTATTAGCG
CCGTGGTTTCTTCTTTGGGAATTTCTCCTATCCACAGGCTTGACTTTTTTGTCTGTAACT
GAATCTGTCACATAGAGATTGTCTCATCAATCATCTTGCCAAAACAAGGTAATATGGGGC
GAAAGACTCTAGGAGTTGCAATCCAAATTCATTTACTGGATTACTGGACTTCAACAGCGA
AGAAGGATTAGGACTAAATGGCAAATGCATATACATTTTGCTGTCCACATCTGAGTTCTG
TCAGTTCAAATGTGCCATGTGCTGTATAGACTAATTAAACTCAAACCTTAATATTTACAC
GTCCTGTATTTGGCCCGGGCCGATTTTTTTTTGAACATTTTGGATTGTTGGCACCTGATT
CTCGTAGCGGTGGACACTAGCATTTAGCTACGGTTATTACAACGGAACTCGGTATAATGG
GTCGACCATCTTCAGCACGAACAAGTTCCCCTTGTCTCCTCTTGAAACCCTGCAAATCCA
GCGAGAAGATTTTTCGCAGCATCACATCAGTGGATGTTATCCCTGATACCACAACATACA
TTTTCTTCCCCCCAAAAAACACACCAAGCTATTCTACTTTGAGCACTGGAAGGGTAGAAA
TTACATGAAAAAATGAGGTGTAACAATGGCATTTCGATGTCTATTTTAAGGGTATACATT
TCCAATGCTAAAAATTTATGTATATGTCATGCACAAATTTGCAGAGTACCGATTCATAAT
CCTTGTTTAAGTATCTTTTAGGGATTGACAATTTGATGAAAAAATTAGTTCAGTATTGCA
ATGATGGAGAATAGAGTGGGGGGATGAATCAATTATACGGCACAAGTGGTGGGTACTCCA
CATAAGAAGCCATTGAGAGGGGCAGATAAGCTGACCTGAGCTCTTCATCAAGATATGTGA
TCTCTAGTTCACCTTTGCCACTTCCAGGTGCTTTGATTTGGATCTAACCATGAAACAACA
TTAAGAATTTACTCGGTATCAATCGTCTGGTGTTAAGAAGCAGACTATTGACTATAGTAG
GAGATAAAATGTCTCACCAGGCTAAATATTTTGAAGTAATCAAACCTAACTGCCACTTTT
CTAGAGTTGAGAGGCACCAAGTTGGCAGTGACCTGCAGAAGCAAATGCCATCACATCACC
ACGGTACACACGCAGAAGCAGCACTTGCAAGCGGTAACCAGTATTATGGTTAAAAACACT
ACTCCCTTTGTTCCCAAATATATGTCTTTTTAGAGGTTTCACTAGAGGACTACATACGGA
TGTATATAGACTACTTTAGANNNNNNNNNNNNNNNNNTTGCTTCGTATGTAGTCCTCTAA
TGAAATATTTAAAAAGACTTATATTTAGAAACGGAGGGAGTAGTAAATTTTTACCAACGA
CAGCGTGCATGCTGTTTGCTGTTCTAATTTCAGAATGCGTCTCCAAAATTCAGATAAACG
AATGGGAGGTGGGGTAGTGTTACATTGAATGTGCCTACCGTGCTATATCAGTTATGCAGT
AGCTCAAGTCTTCGACGGATGATGAGGTTGCAAGGAGGAAATGGACATTTCGTGTTCTAA
ATCAAGTAAGGCTTCACCAGATGTCCAAAGAGAAGTAAAGCCTTCACCGGCTCAAACAAT
CCTTCAACGGACGCATCCCCTTATCCCAACTTTTTGGGAGGTGCTTATCCAATTATCCAC
AAGAGTAAGGCCATAACACATAGTAAAACTGACCTGTACCACGCCAAATATAATCTGTAA
AGCATATCGTTCCTCCCGAGCGACAACTCTTTGCGTCTTAACGAAGAAAAGCAAAGAAAG
GAATTTTTGCAGTATAATCTATCTCTTTTAGGGCTTGTTCGGTTAATCCCCACCACAAAA
GGATTAGAGAGGATTGGAGGGGATTGAGGTGGAATTTGACTTACAGGGGATTTAATCCTC
CTCAATCCACTCCAATCCCCTTCAAATCTGTTGCAACCGAACAAGGCCTTAGGGGGAAGG
CACACACACTGGAACTAGTTATTGGTGCAAATAAGTTACCTGATTGAAGTAAGGCAGTGT
CTCCATGTTTTGAGCTCGTAGCGTGTCGGTGTTGATCGCCTGGTAAATCGTCCCGTATGG
CCTCAGAAACTTTGGCCTCTGCATGCATCAGTAAGTGAACACAAATGTAGCATTCCAACA
GGGTTTAATATGCCTGAACTAACAGGCTCTTGTCTATTTGGAGAAGAGCCCAGCTGTCTT
CAAGGGTACGTGCACAGTGCACTGAACATCTTTCTTTGGAATGAAAAAGAAGAACCGAAT
GCAGCTGCATATCCTGTTTTGTTTTGTGAGGAATGCAGCCGCCCAGCTCAGGCCATGATT
TAATTGCCATTTTCAGAGATGACAACGAAGAGCTGCTTCAAGAATATGCTAATTTCTGAC
TCTTATTTATTTATTTATGCAATGCATCACAGCACAGAAAAACAGAATTATATACTACTC
AGTACGTACTAAGTTGGTACAAATTTAATGCTAAAGCAGCGGTGTTAATTTTGGGACGGA
AGGAGTAGTAAATAAATGGCGGAGAAGATAAGGAGGAGGAGGAGGANNNGGAGGAGGAGG
AGGAGGAGGAACCTGTGGCTGGAGAATGGAAGTGGAGGTGGTGTAGAGGAGCTCCCACTT
GCCGTTGAGGAGCTCGGACTTGAGCGGCTCCTTGGTCGGGCTCACCTCCTCCAGCCGCTG
CGCGATCTGGACCAACCAACCAACCCGGCCGGAGGGCGTGAGCCATGGAGATCAGCGCCG
GCGAGGACGGCGGAGCTGAAAAAAGAAGGCCACTGGCCACCTCACCTGGTCGACGCGGTC
CTTGTCCTCGGGCGTGGCCTCGGCGCCGCGGTCGAGCGGCGCGATGGCCGCCAGCAGCTC
CGCCTTGAGCCTCTCGGCCTTCTTGGCGTCCTCCTCCTCCTTCTTCTTGCTCCCCGTGAA
GAAGGACGGCAGGAAGGAGGAGAAGGACGACACCGGCGCGAGTCACCCCCGACGGCGCCC
GGCCGGCAGCGGCAGCGCGAGGCCGCCGTCGCCCCGTGGGCGTGGCCCTCCCCTCCCGCC
GACGCTGCTGATGCCGATGCTCGCCGGCGGCGTCAGGAGGTGGGTGGTAGACGACGAGGA
GGCGGCGGCGGCGGGCGGGAGCGAGACGAGCGCCATGGCAGGCCACGGCACGGGAGGGAA
AGAGTAGAGATTTTTGTGTGAGCGAGCGTGGCATGCAGCCCCCCAGTCGTGTCCGTCTTC
TCTCGAAGGAGCCGCGGGGTTTTTGAGTGGTCGGCATAGCGCGTGGGGCAGCAGCCGGAT
GTCTCAACTCGCACAAAATTACTGATCCACCTCAAATCCATCCCGAATCCAAAGGTTTTC
AGTGTCTTGGATTCTTGCATGGTTTCTGTGACTGGACCTCGTATCTTCTACTCCCTCCGT
TCCTAANNNNNNNNNNNNNNNNNNATTTCACTAGGAGTCTACATACGGAGAAAAATGAGT
GAATCTACGCTCTAAAATATGTCTATATACATCTGTATGTAGTCCACTAATGAAACCTCT
TTAAAGAATTATATTTAGGAAC