Contig Data
morexGenes
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Map Locations of contig_98476 (4723 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_98476

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_81841 1 176 bp MLOC_81841.1 Available Available None
MLOC_81840 6 2901 bp MLOC_81840.3 Available Available LOC_Os04g54640.2, FRAME:-3, EVALUE:5e-52, 13104.m05655 protein peptidase, cysteine peptidase active site, putative, expressed
MLOC_81839 1 116 bp None Available Available None





CDS Structure of MLOC_81841






CDS Structure of MLOC_81840






CDS Structure of MLOC_81839






Contig Sequence (4723 bp)

>contig_98476 4723 assembly3_WGSMorex_rbca.fasta
AAAACAGACGGTCAAAAGTTGAGGGTCTCTAATGAACTATAACGACCTTTTTCCTGGAAT
GGTCGAAGACATTTACGACTAAACGAAAGCATTGAAATTATTTTGGTCATTGGTTGTGTG
TCCAAGCCACATCGAATTCAACGTGACAAGCTGACGTGGCTAAATTTTGACCAATTCGAT
TGGTCGTTGATAAGAATGATCGTTGATAAGAATGAGCCCGGTCCAGTTCAATGCTTTAGA
TGGGCCGAGCCCATTAAAATAGTCTTTTTACATTTTTTCTGTCAATTTTTTGTGAGCTTC
ATGGGCCAAGCCCAACGTTATAGCTTTTTTATTGTTGGGCCATGGCCTCTTTGTCTAAAC
AATTTCATTTTCTTTTTTTAATTAAATGGGTCCTAGTTGTGAGGTTCTGCTAACTAGGTC
CCATTTGTCAAACAAAAAATCCACTATCGAAAAGCAACGAGATCATGTAATACAATGGCA
ATCACAATAACAAACTGAGCTCTACAAGTGTAATACAATGGCAACCACTATGAATTTTTT
CAGTCTCTTACAAAGTTGATATGCCTACTATTACAATATATAATTATGCATTCTTGGATA
AGTAGGGCTTCACACAATTGGCTTTGAGGCTTCGCACTTCAACTTTCTTAGGCCTGGAGA
TCCTGTAAAACAAACAGCCATATTTTTAAGAGCTGCCATATACAGATCAAGAATAGAAAC
AAGGAACAAAAACAAACAATTCTCATCATGTGTTAAATTTTCGACCATCATAAACTAAAG
CAGAATAGTGTTTCTGTATTTTGTGCATTCGCGTGTTTTATTTCTAATACAACTTGCACT
TTGTACTTATACCAAAAATAAATGCTTAAGAGAGAGAGAGATAGAGCCTGAGTTAACTGC
ATATTTTTTGTTCCTAATTGTTCAATCTAATGCTAACTCACTTTCCTCAAGGCAAAATCA
ACACAAAAGACTAGTCTGAACCTGCTCGCCTGAAAAATCAAACAGCGCACAAGAGTGAGG
CTAATCTACCTCTGCTGCTGTATGTGCTAGGTGCAAGTAAATCCTGGTCTTCCTAATTAT
GACTCGTATATTTCATTTCCTGGTCTGATTTATGTGATAGGTGTATGTTTTTTTAATTAA
AACAACCAGCAATCCACAGTCAATGTGTATGATTTTTTTAAAACAACCAGCAGTCCGCAG
TCAATGTCTATGTTTTTAGAACAACCAACAATCAACTCCTACTTGAGGCAATAAAAAAAG
GAAAACTAGCAGGTGGCAATTAAACAAAATGAACGATTCTTGACAAAGACAAGTATTGAT
TTAATACCCATCTCGTAAGGTTCTGCTGCTATGCTTTGCCTAGCGGCGTCTTAGTTCTGT
TCAGAAATCTCTGCAAACAGATAGGGAGGAAATGAATTCTTCAGGTGAAGCTCTCAAGAG
ACATCAGGTGAGATTTTCAGACAGGATTGATACGTTTTTTTCAGGAGACATAAGAAGGGC
AAATGCTGATACTATAAGAGTAGAAGGGGCCGATGGATTAGTGGTAGGTGACCTGAAGAG
TGAAGAGGACGGCTGATTGGCCAACGACCTTGTCGTACTCCAAACCCACAGCAGCCTGTC
CGGCCATGGAGATCACAGCCAACCTGGTGACACATTAGACATGCCAGTCACTAGCTTCTA
TTATCTCTGATCATGTTTCACCAAAGTCGGATATGGATGCAACTAATAGGTTTAACTCTA
GCATTACCTATCCACTTCCTTTTGATCGAGCTGGCCACTATATAGCATCTTCTGTAGGTG
GTCATCAACGAGGTTAACATGCTGCTTACCAATGTCCAAAGAGCATCCCGAGATAGGTAG
GCCAGTCAGATAGGCAACTGAATCACAACAAGAGCATTACAGTCAGTAAGATTCTAGCTG
CAGATCCACCATAGCTGCAGCAAAAATCAGAGCGCACATACCCAGAAAATGAGCAGCTTC
ATGCCTAGGGAAAACCGCAGAAAAAGAACCAATTGCCACCTGCAGTAGACTCCGGCGATG
GATGTAACATTAGCATTTGCACTGTAAAATATAACCTTATGATTCTAATAGCTCCAGGTT
ATAGGATGAGTCAAAATTCCCAATACATCTCAAGTGAGTTAATACCAAAGTCCTTAGCAG
ATAGCACAACAATCTTGTATATTACACTGACAGCTAACACATTTCTACTAATAGGAAAAA
AAAACTACGCACACTGATGGCACAACAATCTTGTATAGTCAAATTGGTTTCTTATAAACT
ACACTTTTGTTAGAATTGCAAGAATTCAGCGTCTAAAATAGAACAAAAGCTAGAAGGGGG
CTGTGACCTGGCTTCTCCCAACTGGAAGTAGCAAATGGTTAATCAATACAACAGGAGCCA
CTACAAACTTTCTGCTTCTCAAAAGTAAAGCATCGATATTAAGGATTTCGAGAACTCAAA
CATTCCTGTAGACTTTGTCAGATGTAAATCAGCTGGCATTGGTTCGATAATTCTCATATA
CATCAGCATGAGATGCTTTCATGTGAAAGTAATAATATGTCCTCGCCTCCTCGGCCTGGA
CAGCCTTATGCAGGGCAGGCGCCCTCAGATCATTCGCCGTGTCAACCACATACACACGAC
CGGACCTGTGAACAACCACCAGATCATCAGCATTACAAACTCAGCTAAAATTCAACTGTT
CGTCCATTCGATCATCGTTGCTCCATAAATACTCATAGCAACGAAGGAAGAATCAATAAG
CGTCGGCTCGTGGGGGCATCGCCATGGCAGGAACTGCAGGCATTCCAGACGGAGTGATAC
AGCTCGTCGCCGATGTGGGTGGTCGAGAGCCTGTGGATCACCTGGGAGTACGTCGCTGAA
CTGGGGTCGACGTCCACCGTGGCCAGGTAATCCGGCTTGTGGATTCCAGTACCTGCATCA
AAATTCAGTGCAATCAGGCAATCAACACACTTATTACCTGACACCTGCATGAAATCCATG
GCCAGGGTTTAAAACTGCACAAACACGACACGATGATTTACAACACCGAACAAGGAATCA
AACTGACACCACACTGGGTAAAAGGCAGACAGAGTCCCTTGTCCATCTTTGCCCTTATCG
TGCCAGCACTGTAAAAAGCCCCCAAAAAATCTTGTTGTGTTGATTGATTCTTATTTACTG
TTGTTCTTTTTGCATGAGAAAAGAATGCAATATTGCTTGGTTGGATATTTCCATTGAAGA
AAACCCTCTTGTATTCCCTGGAAACTGATAATTTGATGACTAGTATGTTGTGTGCAATTG
GATGATGACATTGTGATTGAACAGATATTGCCCGCCCCAAGCCCAGTTATATTGCCTACT
GAACACAGATGATGAGAAATACCTATGTATATTTTGCCTGTTGTACAGATATATTTTACA
GTGATGTGTTGCCTACGGCCTACCGAAACACACTGATGCTGGAGTTCTTATGGTATTTTT
GCTCACATATATCTCTCAGTGTTGCCCACAAAATATGTTCCCTACTAAACACATATTTTA
CAGTTTTGTCTACTGAAAAACAAAGATGCTGCTAAAACTTATGCAGTCTTTTTGCCAGCT
TATCTCTCTCAGTGTTGCCCAATAAACTGTTGCATGCATCATGAAAATTTGGCTGTATTT
CAAAAGCTGGTGCAAACACATGGATAAATCATGTGTGCCTGACTGTTTTCCCTTGTGAAA
ACTCTACAAAAATGAGTAATTATACTGCATCTCTAAAATCCATTGCACCGTGATAAATGG
TTTTGCCATGGATGAGAGTAGCTAGCCCTACTCGTTCTGCCTCCACCAATAAATTCAGAT
AAAAAACTGCGCTCGGGGGCATCAAGAGAAATTGCTGCGCAATGCATCAACAATCCCCTA
CAGCCACAAAAAGCTGACCTCTGGTTGCAGATGTAACAGAGACCCCTCATTCGTTCGTCG
ACCCGCCACAGGGCTACTGCGTCGGGCTGCCGCCGAAGGCCCCGTCCAGGGCGCTCGGAG
TCGGAGCCATCATACCGGTGTTGTAGTCCATGTCCATGTCCATGTCGAGCCAGTCCGCGA
ACATGACCTTGGGGAGCACGAGCGCGTGCAGCCGGATCGAGACGGCCGCACCGGGGACTG
TGAGGCTGCTCAAGTCGTCGGCCGTCGACGACGACTCAGGCGGCCCGGACGAGCCGGAGT
TGGACGGCTGGTTAACGGTGCTAAGTTCGCGGCCGCTCTCGCTGGGCGTCGGGCTCCAGA
TCAAGACTTCACATGTGCTCGCGCCTCGGCCTCGGTGCGTACGGCCGTGGAGGATGAGGA
GACAGAGGAGGGCGAGGACTGGGCGGGAGCCGGACGCAGCGGAGGCGGAGGAAGAGGAGA
GGCGCGAGCGGTGTGGGCACCGGAGGTGGCTGTGGCCTCGATCTAGATCTGGGAGAGGGA
GGGAGAGGGCGGCGGTGCGTAGGTAGGCGGTGTTTCGTGCGCTAGTTTTAGGTAGGAGAG
GGAGGAGACATTGGATCTATAGGACTTGGACGGCTCACATGCCTTCGGTAGGGTGATGCG
TGGGAGAGTGATACTGCATCCTCATTCGTTCGAGAAATGTGCCACTTAAAAACTTCTACT
CCCTCCGTACCTAAATATAAGTCTTTTAAAATATTTCACTAGGTGTCTACATATGAAGCA
AAATGAATGAATCTATAATCTAAAGTATATCTATATACATCCG