Map Locations of contig_98129 (8684 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_98129

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_81773 2 1752 bp AK251203.1 Available Available None





CDS Structure of MLOC_81773






Contig Sequence (8684 bp)

>contig_98129 8684 assembly3_WGSMorex_rbca.fasta
TTGCCATTTGCAATCAAGTGGAAAAATTTNNNNTTGCAATCAAGTGGAAAAATTTAGTGT
TNNNNAATCAAGTGGAAAAATTTAGTGTTATTNNNNCCAAGAACTATGGCCTTCACTTTG
GCTCTAGCGCCCATTTCATTTCCTCCTCTCTTAGGAGAATACGCAAGCGCTGTCCGGCCT
CGAATTTGAGATCCCTTTCGTTAGCATCCAGAAGACAACTCTCAGCCTTCCGATCTAGAT
TGTCTATAAGTTTGAGGAGCTTATCTTGCTCTTCTTTATATATTCCACACACATTCTTAG
ACCAGCCCCTCAAATACTGTCTAAGATGTCTAATCTTATACTGCCATCTTTCTATAGAGG
TTTCGCCCCTGACCTCTGTATTCCATTCCCTCTCGACCATATCCATGAACCCCTCCCTTG
TGAACCAACTTGATTCAAAAGAGAATCCATGTTTGTTTCCTATATGGCTAGCCTCACCGG
AATCCAGCAACAGAGGAGTATGATCCGAGATTGCGCGTTGAAGTTCTCTAACAGTTACTA
GAGGGAACTTCTGCTCCCACTCTACACTAGTTAAGACACGATCCAACTTTTCAAATGTCT
GATTCTGTAGAGCATTCACCCAGGTATATTTCCTACCTGATAGAGCGGTCTCCCTCATAT
CTAAGCTCTCAATAATTGTGTTAAACATGAAAGGCCATCTNNNATCAAAATTAACACTAC
TTTTTTCATCAGCCCGCCTAATAATATTAAAATCTCCACCTACCAGCAATGGTAGTTTGT
CATCACAAATCCTGACCAGATCTGCTAGGAAATCAGGCTTTAGATCTGGCTGTGCTACGC
CATAGACGGCAACGAGAGCCCATTGGAACCCGTCATCCTTAGATCTAATCTTGAATTTGA
CTGCAAACTCCCCAAACACCACCTCCCGCACTTGAAAAGTGTCACAACGGACCCCAAGTA
AGATCCCACCGGACCTTCCTCTTGGAGGGAGACAGTGCCAGTCAAAATCCACCCCAGCTG
ATAGAGAACTTAAAAAATGAGACGTAAAGTTATCCCTCCCTGTCTCCATCACTGCGATAA
AATCAAGGTGATGCTCTAAAGTAGCCTCTGCTAGAAATCTTCTTTTAGCCAAGTCTCAAA
GACCTCTGCTATTCCAAAAAATTCCTCTCATTAATCATCATAATTTTTTTTGGCAATCTT
AAATCTAGCACTTCTACGTATCGCAGAGACCGGATACACTTTCCGTCTCCATGGACGCTT
CGGCTTTTCCAGCAACTCCTGGTCCATATAACCAGAGAATTGAGGCTCAGCCTTATGAGA
TTGGGCACACATCCCTTGACCAACTAAAACCTCGCCCGCACCATCCTCTATATCCACTGA
CGGGGCCAGACTATCACAAAGAGAATTCAGTCCCCCTAGATCGTTAACTTCAGACTCTTG
CATTGGTTTAACTGCCGCTAAATTTCGTACTAAGTCTAACGCTCTATCGACCTCTAAGTC
TAATAGATCATTAATAGATTTCGAAATTTCTCGGCCATTGTTCCCCAATGTAACCCCAAT
AGAACCTGCCTTATCTAGAATATCTTGAGGAGAAAAATGAAGAATAGAATCGTTAATGCT
GAAAGACATACCTGTCTCAGTTTCGACATCTCTCATTTTAGCCGCACGCATAGCACGTCC
CATCTGTAAATAATCCGCATCAGGTTGATTCTGAATTCGCCGACTGGACCTCCTGTCCGA
AGTCAGCGGACTTTGAATACCTCCGTATGCTATGACCTGCTCAACAGACGGCGGTGCAAC
GACCTCGCCATGGTGCCCCTGACCAGTACCCTCCAGCCCTGACACCCGCAAAGATGATGC
CCCGGTTGCAGCCATAGTAGCGATAGGAACCGCAGCAACAGGGGTTGATCTCTCGGCTGA
CATGAAACCAGCAGCAGGGGTGGATCTCGCAGCAGCATCCAACGACGGAAGTAGGCCAGG
AGGAGGAGTCGCTGTAATTGCCCTCGGTGTGGCTGGCAAAAAGGTAGCAGCCCCAGGGGT
GGCTGGCCGAGAAACAGCAACCCCCTGGGTGGCTGGCGATGGACTCTACAGCAGCAGCGA
ACCCTGCCTAGGCGACCCAGGCGGCGCACCCCTCGGCACAGTACCCAACCCGGACAACAT
ATGCCTTGCTGGCTGCACTGCATCACGTTGCTGAGACCGGCCCGTATCAGCATTCCTAGC
GACAACAAAATATTCCCCAAGAGAAACTACGGTCAAAGCTTCCTTAGGATTTTTAATACT
GAATGACCCTGACTTTGCTTGCTTTCCTTGCGGCTTAAGATGAACCAGATCCCGCTCATA
CTTCTCTGAAGCCCTCCCTCGAATCTCTGGCGCCGAGGCTGGTTCAAAGGAACCGAACCT
AAGCTGCGTCGAGGGAAGAGACACTGGTTGAGCAGCCCCTGTAGCAGAACCTGAGGTAGG
TTGATCCACCATCTTTGTAATAACTGGCTGTTGATCCTTCTTATCAGATTCCCTAGAACC
CGAAGCATCATCTCCGTCAGCCATATCGGTATCTTTGTCTGTCCCATCCTCCTCGAACAT
ATCCGGACTCTCGATCTCGAGTTGCAAGGTGTACCGCATTCCATCATAAGTCCATATAAC
TTCATCCGGTACTAGCGCAATATCAATTACACTAACCCTCATCCTGGCAACACCTTTAGC
CCGAGTATATTGCATATCCACCCTCTCAGTCTTACCTATCAAAGATCCCAAACTCCAAGT
CACCAGAAAGTCATTTAGAGCCTTTGACGGGGCCCCTGAAAAACGAACCCAAATCTGAGG
AAGTGGCACACCTTATGGCTCCTCATTCTTCCAAGCATCGAACTCTAGCACACAACTAGT
ACTAGGAACCCGACACATACCAAACTTGAGCAGTCTAGCTAGGTCCTCCTTGGTAGGAAA
CACAACCTTGAACACATTATCTGCTATAAGGACCAGTTCCCACCGAAACATTGATGAAAC
AAGATCCCTCAACTGTTGCACCACCTGCTCAGCTGACATATTACCACGAGCCACCGTAAC
CGTCCCCGTATAGGCCGCGTCTGGCACATGCAACGACGTTGAAGCAGAGGGAGATTCAAA
GAACATCAACTCTTGGCAGCAAACCCCATATAAAGTGACGACATGTATAGGACCAACAGT
AAGGGGGCACTTAGCTGAGCCATGCTTAGGCTTTAAGCAAAAGTCACACAGATCCGCGCT
GCATTCGGAAACAAAATGACCCGTCTCACTGCAACGGTAGCATGTCATCTTTTCTTTTTT
GCGTGCCCACTTGGAGGGCCTATCCCCCCCCCTCTGCCTTCGCAAGCGATACTCCCTTGT
CAGCCAAGGAAGGATCCTCCTCGGAAACAGGTGGCAGCAGTGTATTCCCCTTAGGAGCAT
TGGAAGGTACTCCCGCCGTTGTCTTGGCAGCATCTACCTCTACTGGAGGCGTGGGCGGCT
TCAATCTCCTGCCACCACCTCTCCCTCCCCAATGTTGCTTATATCCACCTCCCTAGGGTG
AGTAGGACCCGAGACCCGGGGCACAAACTGTCCCGGAGGACCGGCGAACCCATTAGCAGC
GCTGCCATTGCTCTGCCAGGCATAGCCACGTCCTCCTCCAGACGAAGAGGATCCACGGTG
CTGTCCATCACCATATGCATTAACACCATCATCCCCCCATCGACCTCTCGGCTGCATCCT
GTTAGTATCCGCCCGAGCCGCGTTGGGCAAACCCTGACCAGCAGCGGGAACCGGTGCAGC
CGAAGCCTGGCCCGTCTGGCGCCCTGGCGGCATCACGGGCTGCTGCCTAGTCCGCCCCAC
AGCCTGGGAAACCGCCGGTGGTCGAGGGGGAGGCAGCGCCTGCTTGTTTCCCCGCCCCGC
CATGCACCGCAGCGCTGGAACCCGTACTGCACGACCCGGCCCGAGCGAAGGGAAGCCAGG
CAAACGCCGTCGTGGAACCCTAGGCAGAGCCGAACTCGGTATATGCAAACTTGACGTAGA
AACCAAGTCCTGATGATTCTCGTCAAGGCAAATCTGGGCAGCCGTAGGTGTAGGACTTGC
AGGTTTTGCTAGATTGGAGTCTATCTGGGCCATATACCCAGTTTCTTTTAAGCCCAACTC
GAGCGCCGGTCCCAACGGCCCGACAACAGCCATCGGCTCGTTCAAACGTAATTCGCGAGA
ATCACGGGACGACAGCACCTTGTCAGGGACTGACGTCTGCAATTTACGGCTCTTACCCTT
GTTCTTCCTCTTAGGCAAAACAGTAGTCCAAGCCTCTCAAGGTATGATGTCCGAGATCCG
CAATGGTTCGAGATGAACCTTAGGCAGAGGACCGCTCCAAGGTTTAATCGCCAATCGCTC
CTTGCGTTGAACTACCTTAACGACCTTCGAATCAGGCAATGCATGAATAAAATCCCTCGT
GGCCGGATGGAAAACCTGGTCGCAGAAAGGAGCAGAGACCTCCTGTGCTACGGCAATGTC
GTGGTTCTCGTCGTCTTCATCTTTAGCCAGTACCCAAAACCTCCCCCCAACTCGAGGGAG
AAGTCTTGGTGAGGCGATCTTATCATCGTCAGATATGTCCACCAAATCAGGCTGCATCCG
TTCTTGTGAATTCACCTGCAGGAAAGGAGAAATACAAGTAACAGAAAAGATATCCACCAT
GAAATGCGCACCTTCGCAGATGAGATCTTCCTCTTGGAGATGGCAGCCGGCGAGGATGTC
GTCGTCGTCATCCCGTAGTGTCATCCAACGAGAAACCGAATGAAAAACAATCTGCCCCTC
ACGCAGATCCGAATAACCAGCCTCTGAGTACGCAACTCTCCATCGGACACGGACAGTAGG
TCCCTCCACCGCCGAGATCGGGCTCCGGCGCCGCGCCTGGGATGCGAGATCGGAGGAGGA
GTACCGATGTTCCCCCTCTCCGACGATGCCCACGGCGGCCCCCGACGCTCCCAGATCGCC
CAGGTCGCCCTCTCCCCTCTCTCCGCGAAACGTCATCCAAGGATAAATTAATAGAACGGA
ACTACTCTCCTGGCATAATGTTTCCCAGATCCTTCGCCCGGCCTTTATCCAAGTCTCCAC
ATCGTTTTTTATCTTAGCAGGGATGTTGTTTGGCATGGTCAAAATAACTTGGAAGACACA
TATATTTCTTTCATTACAAATCATCCAAGTAACTAGAATAGTGTGGGTTCCCATAGGGTT
TCTTTGATGACGATTCGTGTTAGACACCTATTTGGACCATCATTTCTTCACCGAGTTGTC
TCCAGGATTGTATGTTTAGAAAAATGAGACCAAGACAAACTCAAATCTAGCTCTAAACTT
ACTGAAAAGGGTGGGCTTTATTTGTCTTGCATAATTAACTATTAGATGTTACATTCATTA
CATATGCATACAACATGCAAGACACAAACTACATTGCAATCACCAGTTGCGCAACATCAG
TGGAAAATACCCGTCGTCTATGAGGGCACATTTTTTGAAGGAGTCTATGCGAGCACTTCT
TTGCCTGTCCACCGACGATGATCCCTTCCTCCGACGGGCCAAAATGGGCCCAATAGCAGA
TGGGTTCAGGAACTGGTCATTTTAGCAGTAGTGATTCCATATGTGTGACAATATTATGTG
TCCCTGATATTTAATACACCATATGCAGAATTTAGTACAGAAAAATCTACCACCAGCAAT
ATAAGTTCCAAGTTAAGACTTAAGAACAAGATATCAAATAGTAATAATGCCCATGGATTC
CTTGTAATAGAGCAAAAAGAAAAACAACATAACAAAGATCCATTGATTAAGCAGCATGCA
ACATCTCCACTTACACGTCTAATTCATAGTAGCAATTGATCTCAAGCTCTCAACAATGGA
AATGAACCAAGCAACAATTGGGGATTGATTATCTGACGAAACATGCATATAACTAAGAGC
ATGGAGCTTATTCGAGAAATCAATGGCAGCATGCCCGGCCGAGCCAGAGGCGGCCTAGCC
GATGTAGTACATGGGGTCGGGCAGCTTGAAGGTGCGGGCACCCTCTGGCGCGCCGAGGAT
GTCGCTCCACTGGTCGCCGATGTTACCGACGATGACATACCCGGCGTCCTGCAGCTTCTG
CCTCTCGCCGGACTTGTAGGTCACCGCAGAGCCCTTGAACCCGGGTTGCTTCAGCAAGAG
GTTCATCCACCCAGAGATCCCCTGGCGGCGGAGGTTGGTGACGGTGATGGCCCTCTGGTC
CTCAGTCCGGCCGGTGAGGAACACCGGCTTGACGCCGATCGAGCGCAGCTTGTTGTACAG
CCGCTTCGTCTCCGGCAGGGCTGGCGCGCTCCCCTGTAGCACGTATGCGTTGAAGCTGGT
CGCGTTGAACGGTGTAGCCCTGCACGCACATGTATACGAGGATAGATTAATGGCAGATTC
AATCATATCAGCTACTAAGAAGTAGTAGTAATTATGCATATCCAAGGAACATAGGCAACC
TAGATTATGGCCCAAGTGGCCAAATGGCCAAGGGGATGGGCAATACGTAAACGCAATGAT
GCTCTGTATCTGTACGTAACGCACGTGCATGAGCAGTACGTAGTTGTGGACGTCGTAAAT
TAAGTTGGTCAAGTGGAGTAAATCAATGAATGTGACATAGCGAGGTTCACTCCGGCATCA
TCACGCTACTGTTTTGTTGGACCGAAAACGCAGTTGTAGTATTTAATCTCATCGTGCACA
GCTTTGTACGCAGCAGCTCAGCTTTGTTGATTCCTTTGGTAAAATAGGTCTACCATTGCA
ACCTTATTGCAGAGTTCCGACTTTCAACAAAAAAGGTTAATTTTGTCATGATTGTGATGA
AACAAAGTTATTTGAACCGCTCGATTAGTTAGACATGCTGTTATAAGCTTTTGATCTTTC
TTTTTTCCTTGATGCGCATATATATACTTTTATGTATCTTTTTCCAGCCGCCCAGTGTAG
ATCCACTTTAAAGTTCTTACGGCAAGGTACAGTTTATTTTAAATCACAACGAACTAGCTC
CCTCATCACATTCAAAATATACACAAGCAAGCTATCCGGAGCTAGTTAATCATGTTTTGA
ACTAAACTGGTATCATCATGTTGGCTAGATATCACCTAGACTTCTACTACATTTCAAGTT
AGTTTCCATCTTGGTTCAAGAGAATCTTCTTAACTAAGAGGAATAGTGTTCAACTATTTG
AGAAAAGAGGAATAGAGTTGTACTCCATCCATTCTTAAATATAAATCTTTTTAGAGGTTA
GAGTAATACATATGAATGTATATAAACATATTTTATAGTATAAATTCATTCATTTTGCTT
CATATGTAGACCACTAGTGAAATCTTTTAAAAGATTTGTATTTAGGAACGGAGGGAGTAG
CATGTAACTACTAACTATGCACAAGATGTTCTGACCTCTCACATCTTCTAAAATAAGTAA
TTATATCCATCTAAACTCAGATTAGCATAAAATAATGAAAACGTATCGGAGTACTATCCA
TCTGAACTAAGTTTAGCATAACATAATCAGAAAATATCAATCGATTAGCATAACATAATT
AGAACGTATCGGCTGATAAGGACAGCTGGAAATAAACGTTTCCATAAAGTAGCCAAGTGG
AGAACATATACGGTCCTACCCCGGCCACCATATTCTCAAACTATAGTACTATGTTTCCTT
CTTGTTTTGTTGACCATTCATAGGCGGGACATATTTATGGTCCTGATGGCCGTCTCTGTG
ACTGATTTGAGGTAACCAGCAATGATGCTGCCTAAGTGTGTCCAACACGTCCAATTAATA
CTTTTCTAGCTAGTGAGTATATTCCTTGTTTCCACTTCTAGTCTCATTTGTTTTCCCACT
TTCATTCATTAGAAATCTTATGATACTAGTGCTTTCTAGCTAGTGAGTTCATTTGAACGA
GGTCTAGTAAGATATTTATTTTATCTGAACGAATAGATCAGTGCAAGCCCCTGCTGAAAT
GCACCTAGTTCTTTCGAACTCTAAGTATTTAGATAGAGAGGGAGTATAATGCACTACAAT
AGTGTGTATGTGTACAAAAGTATGACATAATTAGAAAGTATGAGTTGACTAGCATAACAT
AATTAGAACATTTCCATAAAGTAGCCAAGTGGACAACATATACGGTCCTACCCGGCCACC
ACATTCGCATGCCCATCAACATCACATCTCTATCTCAAAATATAGTATGTTTCCTTCTTG
TTTTGTTGGCCATTCATACTAGGGACATATGGCCCGAGTCCTACTGGCAATGATGATGTC
CAAGTGTCCAACACTTGTGATTAAAGTACTTTTCTACTTAGTGATTATATTCCTTTTTAT
TTCCAATATTTCTATCCTTATGTGCTTTCCAATTTTCATTCATTACAGATCTCGCTGGTA
TTTTTTAGCTAGCTAGTGAGTTGATTTTTTACAATATATATCTAGTCAGATTATTTACAC
TTCATCTTAGTGAAAAGATGAGTGCAAGTCCCTGCTCGGTCGGATGTACCTGCAGTAAAT
AGCAAGTCTAATGCATGCACTACACGTAGAATCAGTAGTGTCTATGTAATGTATACAAGA
GTGTAAGTACGTACCCGAAGCCGTGCTTGGCGTAGTAGGGGAGGTTGGAGAGGGTGGTCT
CGTCGATGTCGAAGACCCAGACCTCCTTGCCGTTGCCGGCGAGC